Genetics and mapping of a new anthracnose resistance locus in Andean common bean Paloma

de Lima Castro, Sandra Aparecida; Gonçalves-Vidigal, Maria Celeste; Gilio, Thiago Alexandre Santana; Lacanallo, Giselly Figueiredo; Valentini, Giseli; da Silva Ramos Martins, Vanusa; Song, Qijian; Galván, Marta Zulema; Hurtado-Gonzales, Oscar P.; Pastor-Corrales, Marcial Antonio

doi:10.1186/s12864-017-3685-7

BMC Genomics

Table 5 KASP primers associated with the resistant gene in Paloma

From: Genetics and mapping of a new anthracnose resistance locus in Andean common bean Paloma

SNP id	NCBI ss# id	Physical position (bp)^a	BARCBEAN6K_3 SNP ID	Primers sequences^{b, c, d}
SS75	ss715645931	48838736	BARCPV_1.0_Chr01_48838736_G_A	F1: GAAGGTGACCAAGTTCATGCTGTGTTATGTGTAGATATATTGAAAGGC F2: GAAGGTCGGAGTCAACGGATTACTGTGTTATGTGTAGATATATTGAAAGGT R: TGATCTCTTAATGGGAGGTTTGTTGCTT
SS76	ss715645913	49001931	BARCPV_1.0_Chr01_49001931_C_T	F1: GAAGGTGACCAAGTTCATGCTCAGCTTCTACCCGTGGCTGC F2: GAAGGTCGGAGTCAACGGATTGCAGCTTCTACCCGTGGCTGT R: GTCGCTTCTAGTTGTCTTTAATTATCTTAT
SS77	ss715645900	49181319	BARCPV_1.0_Chr01_49181319_T_C	F1: GAAGGTGACCAAGTTCATGCTCAGTTGAACATTATGTTACAGACTACTTT F2: GAAGGTCGGAGTCAACGGATTCAGTTGAACATTATGTTACAGACTACTTC R: AAACCTAAACTAATAACAAAATTTATGTAT
SS78	ss715645883	49329790	BARCPV_1.0_Chr01_49329790_T_C	F1: GAAGGTGACCAAGTTCATGCTATTAGGCTGTTCAAGCTTTCCAGGT F2: GAAGGTCGGAGTCAACGGATTAGGCTGTTCAAGCTTTCCAGGC R: CACCCCAATTACATTTTCTCTTTATGAATT
SS79	ss715645868	49487812	BARCPV_1.0_Chr01_49487812_C_T	F1: GAAGGTGACCAAGTTCATGCTGCCGCTGGTGAAGATGAATACC F2: GAAGGTCGGAGTCAACGGATTCGCCGCTGGTGAAGATGAATACT R: CGTGTATGCGACCCGGTCGAA
SS80	ss715645856	49617274	BARCPV_1.0_Chr01_49617274_G_A	F1: GAAGGTGACCAAGTTCATGCTATATTTGTTATTATGGTGTCATCATATCTTAA F2: GAAGGTCGGAGTCAACGGATTATATTTGTTATTATGGTGTCATCATATCTTAAT R: GTTTGAACTGATGTAATAACTGAACCTATA
SS81	ss715645862	49742126	BARCPV_1.0_Chr01_49742126_G_A	F1: GAAGGTGACCAAGTTCATGCTATTGAAGATAAGTACTATCGATGATATCAG F2: GAAGGTCGGAGTCAACGGATTGTATTGAAGATAAGTACTATCGATGATATCAA R: GTGAGGTAGTTCGATCCTCTTGAGAT
SS82	ss715645258	50155987	BARCPV_1.0_Chr01_50155987_T_C	F1: GAAGGTGACCAAGTTCATGCTAAAACCAGGTTTATTGTCCTAGTTTACAA F2: GAAGGTCGGAGTCAACGGATTAACCAGGTTTATTGTCCTAGTTTACAG R: GTATCTCATCTTGTTGCAAGAGTGAATATA
SS83	ss715645248	50546985	BARCPV_1.0_Chr01_50546985_T_C	F1: GAAGGTGACCAAGTTCATGCTCATATACTTTCTGGGTGTAAACTCTGA F2: GAAGGTCGGAGTCAACGGATTATATACTTTCTGGGTGTAAACTCTGG R: CCCAGGTGTTCTGGTCATGAGTTAT

^aPhysical position of SNP in the common bean reference genome v1.0; ^bF1: Forward 1; ^cF2: Forward 2, ^dR: Reverse

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com