Table 1 Conserved miRNAs in H. roretzi
From: Genome-wide survey of miRNAs and their evolutionary history in the ascidian, Halocynthia roretzi
Location in Scaffolds (S) and the orientation (+,-) | Family | Mature sequences (5′-3′) | Precursor Length (nt) | MFE (kcal/mol) |
|---|---|---|---|---|
S648_2373-2295:- | let-7 | UGAGGUAGUAGGUUGUAUAGUUU | 79 | -30.4 |
S93_67805-67726:- | let-7 | UGAGGUAGUGGAUUAUGCAGUU | 80 | -30.1 |
S93_68361-68283:- | let-7 | UGAGGUAGUAGGUUAUAUCAGU | 79 | -22.6 |
S93_68526-68445:- | let-7 | UGAGGUAGUAGGUUAUGUAGUG | 82 | -24.6 |
S93_68698-68609:- | let-7 | CUGAGGUAGUAGGUUAUGCAGUU | 90 | -31.2 |
S24_284667-284752:+ | miR-7 | UGGAAGACUAGUGAUUUUGUUGUUC | 86 | -19.5 |
S159_72225-72288:+ | miR-9 | UCUUUGGUUAUCUAGUUUUGUG | 64 | -20.3 |
S93_128856-128791:- | miR-29 | UAGCACCAUUGGAAAUCGGUC | 66 | -19.8 |
S65_9585-9666:+ | miR-31 | UAUGGCAAGAUGUUGGCAUAGCUGC | 82 | -34 |
S298_83663-83598:- | miR-33 | AAGUGCAUUGUAGUUGCAUUGCACA | 66 | -20.8 |
S160_170587-170662:+ | miR-34 | AGGCAGUGUAGUUAGCUAGUUG | 76 | -19.3 |
S27_318389-318451:+ | miR-92 | UAUUGCACUUGUCCCGGCCU | 63 | -18.8 |
S57_155850-155929:+ | miR-92 | UAUUGCACUCGUCCCGGUCUAU | 80 | -21.5 |
S181_161093-161016:- | miR-96 | UUUGGCACUAGCACAUUAUU | 78 | -25.2 |
S375_52432-52351:- | miR-124 | CGUGUUCACUGCAGACCUU, CAUUAAGGCACGCGGUGAAUGCUAU | 82 | -30 |
S375_52641-52557:- | miR-124 | AAUUAAGGCACGCGGUGAAUGCCAGA | 85 | -37.6 |
S375_60909-60992:+ | miR-124 | UAUUAAGGCACGCGGUGAAUGCCAAG | 84 | -37 |
S60_145419-145497:+ | miR-126 | CCUUGUUACUUACGGUACC, AUCUCGUACCGUGAGUAAUAAAGCU | 79 | -38.2 |
S6_131727-131818:+ | miR-133 | GCUGGUCAACCGGAACCAAAUC, UUUGGUCCCCUUCAACCAGCUGUU | 92 | -29.5 |
S56_118756-118667:- | miR-135 | UAUGGCUUUAUUUAUUCCUGUGUGA | 90 | -32.9 |
S67_157861-157774:- | miR-153 | GUCAUUUUUGUAUUAUGCAA, UUGCAUAGUAACAAAAGUGAUCAU | 88 | -40.3 |
S181_160894-160804:- | miR-182 | CUUGGCAAAAUAUAGAACUC | 91 | -36.1 |
S181_165741-165631:- | miR-183 | UAUGGCACUAGUAGAAUUCACUGC | 111 | -36.3 |
S602_41811-41890:+ | miR-184 | UGGACGGAGAAUUGAUAAGGAA | 80 | -30.4 |
S54_165680-165756:+ | miR-196 | UAGGUAGUUACAAGUUGUGG | 77 | -25.6 |
S353_78598-78518:- | miR-200 | UAAUACUGCUUGGUAAUGAUGAU | 81 | -24.5 |
S244_68891-68803:- | miR-216 | UAAUCUCAGCUGGCAAUCUGUGA | 89 | -35.3 |
S244_68624-68517:- | miR-217 | AUACUGCAUUAGGAACUGAUUGGU | 108 | -30.3 |
S248_20812-20705:- | miR-218 | UAUGUGCUUUGAUCUAACCAUGU | 108 | -34.9 |
S21_373535-373467:- | miR-219 | UGAUUGUCCAAACGCAAUUCGCG | 69 | -19.3 |
S11_93983-94061:+ | miR-281 | UGUCAUGGAGUUGCUCUCUUAUU | 79 | -24.3 |
S99_176620-176695:+ | miR-367 | UAUUGCACAUUGUAAUGGUA | 76 | -29.3 |
S291_113322-113388:+ | miR-1497 | UUGAAGAAUUGCAGGUGGUAGGU | 67 | -23.2 |
S290_113331-113406:+ | miR-1502 | UUGAACUUUCUAAGGAAUAG | 76 | -30.2 |
S19_110094-110150:+ | miR-3182 | GCUUUUGUAGUUUAGUC | 57 | -20.4 |
S210_48343-48421:+ | miR-3598 | UCACAGUGGUUGUAUACUGC | 79 | -42.1 |
S176_129704-129781:+ | miR-3876 | GUUUUGUUUUAACACUUAC | 78 | -22.4 |