Table 2 Characterization of different sub-compartments of the MIC assembly

Complexity

76 130 194 bp

15 983 936 bp

2 905 995 bp

Genome proportion

80.12%

16.82%

3.06%

Longest contiguous region

286 000 bp

58 000 bp

79 000 bp

GC content

27.58%

26.29%

27.47%

IES

97.70%

2.26%

0.04%

Low complexity

5.40%

5.50%

5.43%

Tandem repeats

0.83%

1.39%

5.95%

TE

1.33% (0.97 Mb)

21.47% (3.43 Mb)

7.35% (0.23 Mb)

not TE

98.67% (75.16 Mb)

78.53% (12.56 Mb)

92.65% (2.68 Mb)

TIR

0.45% (0.33 Mb)

4.96% (0.79 Mb)

0.53% (0.02 Mb)

LINE

0.84% (0.62 Mb)

15.98% (2.56 Mb)

6.57% (0.2 Mb)

SINE

0.04% (0.03 Mb)

0.53% (0.08 Mb)

0.25% (0.01 Mb)