Fig. 6
From: CloVR-Comparative: automated, cloud-enabled comparative microbial genome sequence analysis pipeline
Screenshot of the torSTRCAD gene cluster comparison between different S. enterica serotypes. The Sybil screenshot highlights the tor gene cluster that is responsible for the reduction of trimethylamine oxide (TMAO) to trimethylamine, which is used in anaerobic respiration. The comparison shows that of the six genes that are present in S. Typhimurium LT2 at least one, in several cases two are missing from S. Choleraesuis SC B67 (torT), S. Gallinarum 287/91 (torS), S. Paratyphi A RKS4594 (torTR), S. Typhi CT18 (torRC) and Ty2 (torR). The corresponding genomic regions were manually checked and confirmed to contain interrupted open reading frames in those genomes without gene calls. Gene designations in red were manually added to the screenshot that was directly copied from Sybil browser. Gene designations in red were manually added to the screenshot that was directly copied from Sybil browser