Response of turkey muscle satellite cells to thermal challenge. I. transcriptome effects in proliferating cells

BMC Genomics

Table 2 Summary of gene expression and significant differential expression (DE) in pair-wise comparisons of proliferating cells

Comparison	Groups	Total expressed genes	Shared genes	Unique Genes in each group	FDR < 0.05	\|Log₂FC\| > 1.0	\|Log₂FC\| > 2.0
Cold	33R v 38R	15341	14248	817/276	8826	2746 (0.650)	676 (0.782)
	33F v 38F	15457	14220	871/366	8727	3151 (0.693)	1048 (0.768)
Hot	43R v 38R	14896	13869	372/655	1916	1028 (0.459)	264 (0.417)
	43F v 38F	15238	14119	652/467	4596	1386 (0.674)	495 (0.770)
Line
	33F v 33R	15518	14638	453/427	2092	412 (0.464)	114 (0.403)
	38F v 38R	14973	14137	449/387	2122	263 (0.319)	72 (0.250)
	43F v 43R	15050	13962	809/279	1172	784 (0.764)	320 (0.859)

For each comparison of the treatment groups (Temperature, 33°, 38° or 43 °C/Line, RBC2 or F), the total number of expressed and uniquely expressed genes, number of genes with significant FDR p-value, and the numbers of significant genes also with |Log₂ fold change| >1.0 and >2.0 are given. Only those genes with treatment group mean normalized read counts >3.0 are included as expressed. Numbers in parentheses equal the proportion of up-regulated genes

ISSN: 1471-2164