Table 4 Differentially expressed MADS-box genes related to floral development. Fold change = log2(expression value of each gene of the mutant/wild-type), expression value = FPKM [total transcript fragments/mapped fragments (millions)] × transcript length (kb)
Sequence ID | Fold change | Putative function |
|---|---|---|
Up-regulated | ||
ep456.comp45403_c0_seq2 | 7.24 | MADS-box protein 3 [Cymbidium ensifolium] |
ep456.comp45308_c0_seq2 | 6.83 | AP1-related protein [Phalaenopsis amabilis] |
ep456.comp59563_c0_seq4 | 6.51 | APETALA3-like protein [Papaver somniferum] |
ep456.comp58153_c0_seq7 | 5.79 | SOC1 [Dendrobium hybrid cultivar] |
ep123.comp42801_c0_seq3 | 5.55 | SOC1 [Dendrobium hybrid cultivar] |
CL11237Contig1 | 4.58 | MADS box transcription factor 1 [Oncidium hybrid cultivar] |
ep456.comp52699_c0_seq6 | 3.89 | DEFICIENS-like MADS-box transcription factor [Gongora galeata] |
ep456.comp50057_c0_seq1 | 2.90 | mads box protein, putative [Ricinus communis] |
ep456.comp50389_c0_seq1 | 2.67 | SOC1 [Dendrobium hybrid cultivar] |
ep456.comp49009_c0_seq1 | 2.62 | AP3 [Cymbidium goeringii] |
ep456.comp58153_c0_seq3 | 2.45 | MADS box protein [Phalaenopsis equestris] |
ep456.comp52699_c0_seq10 | 2.35 | DEFICIENS-like MADS-box transcription factor [Gongora galeata] |
ep456.comp52699_c0_seq9 | 2.04 | DEFICIENS-like MADS-box transcription factor [Gongora galeata] |
ep456.comp36865_c0_seq1 | 3.81 | putative MADS-box transcription factor family protein [Zea mays] |
ep456.comp59687_c2_seq7 | 2.27 | MADS1 protein [Eschscholzia californica] |
ep456.comp59687_c2_seq1 | 2.26 | MADS1 protein [Eschscholzia californica] |
Down-regulated | ||
ep123.comp50454_c0_seq6 | −2.12 | AGL66 protein [Eschscholzia californica] |
ep123.comp36586_c0_seq2 | −2.72 | AP3 [Cymbidium goeringii] |
ep123.comp44547_c1_seq1 | −2.98 | MADS box transcription factor [Elaeis guineensis] |
ep123.comp41679_c0_seq1 | −3.45 | DEFICIENS-like MADS-box transcription factor [Gongora galeata] |
ep123.comp30197_c0_seq1 | −3.89 | C-class MADS-box-like protein [Orchis italica] |
ep123.comp40112_c1_seq1 | −6.16 | AGAMOUS-like transcription factor [Dendrobium crumenatum] |
ep123.comp42801_c0_seq2 | −6.60 | SOC1 [Dendrobium hybrid cultivar] |
ep123.comp35467_c0_seq1 | −6.63 | AP1-like protein [Cymbidium faberi] |
CL8650Contig1 | −6.92 | SOC1 [Dendrobium hybrid cultivar] |
ep123.comp20001_c0_seq1 | −7.03 | Agamous-like MADS-box protein AGL62 [Aegilops tauschii] |
ep123.comp42801_c0_seq1 | −7.50 | SOC1 [Dendrobium hybrid cultivar] |
ep123.comp41679_c0_seq4 | −7.91 | DEFICIENS-like MADS-box transcription factor [Gongora galeata] |
ep123.comp42801_c0_seq4 | −8.59 | SOC1 [Dendrobium hybrid cultivar] |