Fig. 3

Performance of OrthoFiller on S. cerevisiae genome with 90% of annotated genes removed. a Using OrthoFiller an average of 1472 of 1473 found genes (>99.9%) matched any of the 4615 deleted genes. In the absence of OrthoFiller filtration an average of 4163 of 4267 (97.5%) of the found genes matched any of the deleted genes. b Boxplot of protein F-scores for genes predicted using OrthoFiller,  versus predictions made in the absence of OrthoFiller filtration, that had a protein F-score of ≤0.95. c Density plot showing the protein and orthogroup F-scores for all recovered genes using OrthoFiller. d Density plot showing the protein and orthogroup F-scores for all recovered genes in the absence of OrthoFiller filtration