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Table 9 SRA RNA-seq data coverage for novel genes in fungal genomes

From: OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations

Species

SRA ID

Instrument/details

Genes in original annotation

Novel genes

Total

W/ reads

%

Total

W/ reads

%

E. gossypii

N/A a

N/A

4768

N/A

N/A

2

N/A

N/A

D. hansenii

SRR1296968

Illumina HiSeq 2000, paired end

5781

6272

92.2%

13

13

100%

K. lactis

SRR1200528

Illumina Genome Analyzer II, single

5075

5076

100%

8

8

100%

S. cerevisiae

SRR539284

Illumina HiSeq 2000, paired end

6560

6572

99.8%

2

2

100%

Y. lipolytica

SRR868669

Illumina HiSeq 2000, single

6432

6447

99.8%

9

9

100%

  1. aNo publically available data found for this species/strain