From: Filamentous ascomycete genomes provide insights into Copia retrotransposon diversity in fungi
Class/Order | Species | Genome Size (Mb) | RIP-likea | Genomic proportion (%)a | |||
---|---|---|---|---|---|---|---|
GalEa | FunCo1 | other Copia | GalEa/Copia | ||||
Dothideomycetes | |||||||
Pleosporales | Pyrenophora teres | 33.58 | 0.15 | ne | ne | ne | |
Pleosporales | Pyrenophora tritici-repentis | 37.84 | Yes [43] | 1.57 | 2.00 | 1.17 | 0.33 |
Incertae sedis | Cenococcum geophilum | 177.57 | Probably | 10.40 | 1.61 | 1.74 | 0.76 |
Eurotiomycetes | |||||||
Eurotiales | Neosartorya fischeri | 32.55 | 0.03 | 0.06 | 0.22 | 0.08 | |
Eurotiales | Talaromyces aculeatus | 37.27 | 0.46 | 0.14 | 0.07 | 0.70 | |
Eurotiales | Talaromyces marneffei | 28.64 | 0.44 | 0.88 | 0.10 | 0.31 | |
Eurotiales | Talaromyces stipitatus | 35.69 | 1.27 | 1.10 | 0.41 | 0.46 | |
Leotiomycetes | |||||||
Erysiphales | Erysiphe pisi | 49.38 | No [47] | 0.48 | 0.11 | 0.97 | 0.31 |
Helotiales | Botryotinia fuckeliana | 42.66 | 0.10 | 0.00 | 0.00 | 0.80 | |
Helotiales | Chalara longipes | 52.43 | 0.13 | 0.00 | 0.35 | 0.28 | |
Helotiales | Meliniomyces bicolor | 82.38 | 5.62 | 0.71 | 0.35 | 0.84 | |
Helotiales | Meliniomyces variabilis | 55.86 | 0.15 | 0.34 | 0.47 | 0.16 | |
Helotiales | Sclerotinia sclerotiorum | 38.33 | Yes [73] | 0.10 | 0.41 | 0.40 | 0.11 |
Incertae sedis | Oidiodendron maius | 46.43 | Yes [74] | 0.25 | 0.26 | 1.12 | 0.15 |
Sordariomycetes | |||||||
Glomerellales | Colletotrichum fiorinae | 50.04 | 0.06 | 0.00 | 0.01 | 0.82 | |
Glomerellales | Colletotrichum graminicola | 51.60 | Yes [13] | 2.52 | 0.00 | 0.95 | 0.73 |
Glomerellales | Colletotrichum higginsianum | 49.08 | 0.07 | ne | ne | ne | |
Glomerellales | Verticillium albo-atrum | 32.83 | Yes [75] | 0.01 | 0.06 | 0.00 | 0.13 |
Glomerellales | Verticillium dahliae | 33.83 | Yes [75] | 0.20 | 0.50 | 0.00 | 0.28 |
Hypocreales | Beauveria bassiana | 33.69 | No [76] | 0.06 | 0.00 | 0.02 | 0.75 |
Hypocreales | Cordyceps militaris | 32.27 | Yes [54] | 1.51 | 0.00 | 0.29 | 0.84 |
Hypocreales | Metarhizium robertsii | 39.14 | Yes [76] | 0.03 | 0.00 | 0.14 | 0.17 |
Magnaporthales | Gaeumannomyces graminis | 43.62 | 0.06 | 1.05 | 0.12 | 0.05 | |
Magnaporthales | Magnaporthe oryzae | 41.03 | Yes [77] | 0.02 | 0.00 | 2.38 | 0.01 |
Magnaporthales | Magnaporthe poae | 39.50 | 0.05 | 0.00 | 0.07 | 0.41 | |
Ophiostomatales | Ophiostoma piceae | 32.84 | 0.03 | ne | ne | ne | |
Sordariales | Chaetomium globosum | 34.89 | No [13] | 0.13 | 0.18 | 0.10 | 0.32 |
Xylariales | Daldinia eschscholzii EC12 | 37.55 | 0.12 | ne | ne | ne | |
Xylariales | Hypoxylon sp. CO27-5 | 46.59 | 0.09 | ne | ne | ne | |
Xylariales | Hypoxylon sp. EC38 | 47.30 | 0.03 | 0.00 | 0.03 | 0.47 |