In-depth genome characterization of a Brazilian common bean core collection using DArTseq high-density SNP genotyping

Table 4 Summary of the P. vulgaris genome-wide diversity based on SNPs-DArTseq

Gene pool	Group	N	S	Θw	SE – θw	NDw	SE - NDw	π	SE - π	P	M
Andean	Cult/Lines^a	31	3506	0.000777	0.000015	0.000554	0.000014	0.002171	0.000281	3858	1415
	Landraces	33	2647	0.000580	0.000013	0.000386	0.000011	0.001357	0.000228	3190	2083
	Total	64	3889	0.000728	0.000013	0.000471	0.000012	0.001781	0.000266	4364	909
Mesoamerican	Cult/Lines^a	57	3283	0.000641	0.000014	0.000665	0.000020	0.004386	0.000488	4177	1096
	Landraces	54	3460	0.000667	0.000014	0.000677	0.000019	0.004330	0.000566	4340	933
	Total	111	3957	0.000667	0.000012	0.000685	0.000019	0.004541	0.000572	4778	495
Whole	All	181	5241	0.000713	0.000010	0.002038	0.000029	0.017125	0.001540	5273	0

The number of samples (N), number of segregating sites (S), Watterson’s nucleotide diversity (θw), nucleotide diversity within (NDw), diversity from Nei (π), number of polymorphic SNPs (P), number of monomorphic SNPs (M), and standard deviations (SE) are presented
^aCult/Lines: cultivars/lines

ISSN: 1471-2164