Table 1 The 16 public RNA-seq data tested
Name | Experiment | Test group size | Control group size | Replicate type |
|---|---|---|---|---|
Marioni [9] | Human liver vs. kidney | 7 | 7 | Technical |
MAQC-2 [41] | HBRR vs. SUHRR | 7 | 7 | Technical |
Oliver [42] | Head tissue of male vs. female Drosophila melanogaster | 10 | 10 | Technical |
Barutcu [32] | MCF7 vs. MCF10A | 3 | 3 | GI |
Liu [33] | 10nM E2-treated vs. control MCF7 | 7 | 7 | GI |
Li [34] | Androgen-treated vs. control LNCaP cell line | 4 | 3 | GI |
TCGA KIRC [27] | Human renal clear cell carcinoma vs. matched normal tissue | 7 | 7 | Unrelated |
TCGA BRCA [43] | Human invasive breast cancer vs. matched normal tissue | 7 | 7 | Unrelated |
TCGA PRAD [43] | Human prostate adenocarcinoma vs. matched normal tissue | 15 | 15 | Unrelated |
Tuch [44] | Human oral squamous cell carcinoma vs. matched normal tissue | 3 | 3 | Unrelated |
ModencodeFly [37] | L1 Larvae vs. Embryos (12–14 h) | 4 | 5 | Technical |
White pre-pupae (12Â h) vs. L1 Larvae | 5 | 4 | Technical | |
Adult male (1Â day) vs. White pre-pupae (12Â h) | 5 | 5 | Technical | |
Pooled Larvae vs. pooled embryos (12–24 h) | 6 | 6 | Unrelated | |
Pooled pupae vs. pooled larvae | 6 | 6 | Unrelated | |
Pooled adult male vs. pooled pupae | 3 | 6 | Unrelated |