Transcriptomic dynamics in soybean near-isogenic lines differing in alleles for an aphid resistance gene, following infestation by soybean aphid biotype 2

Lee, Sungwoo; Cassone, Bryan J.; Wijeratne, Asela; Jun, Tae-Hwan; Michel, Andrew P.; Mian, M.A. Rouf

doi:10.1186/s12864-017-3829-9

Table 2 Enriched gene ontology terms identified from the 2496 differentially expressed genes in the R- and/or S-NILs during 12 h after aphid infestation

From: Transcriptomic dynamics in soybean near-isogenic lines differing in alleles for an aphid resistance gene, following infestation by soybean aphid biotype 2

Class	GO accession	Term type^a	Term description	Query item	Query total	Background item	Background total	FDR
Common	GO:0005975	P	Carbohydrate metabolic process	61	622	1443	29,501	0.000
	GO:0055114	P	Oxidation reduction	80	622	2408	29,501	0.018
	GO:0016052	P	Carbohydrate catabolic process	14	622	195	29,501	0.028
	GO:0016701	F	Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen	14	622	108	29,501	0.000
	GO:0016491	F	Oxidoreductase activity	98	622	2744	29,501	0.000
	GO:0016703	F	Oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)	6	622	11	29,501	0.000
	GO:0010277	F	Chlorophyllide a oxygenase activity	6	622	11	29,501	0.000
	GO:0003682	F	Chromatin binding	32	622	605	29,501	0.001
	GO:0051537	F	2 iron, 2 sulfur cluster binding	6	622	18	29,501	0.001
	GO:0016798	F	Hydrolase activity, acting on glycosyl bonds	34	622	759	29,501	0.005
	GO:0004497	F	Monooxygenase activity	8	622	64	29,501	0.007
	GO:0004553	F	Hydrolase activity, hydrolyzing O-glycosyl compounds	32	622	726	29,501	0.007
	GO:0051536	F	Iron-sulfur cluster binding	10	622	102	29,501	0.007
	GO:0051540	F	Metal cluster binding	10	622	102	29,501	0.007
	GO:0016903	F	Oxidoreductase activity, acting on the aldehyde or oxo group of donors	8	622	66	29,501	0.008
	GO:0004650	F	Polygalacturonase activity	9	622	112	29,501	0.045
Common	GO:0034357	C	Photosynthetic membrane	11	622	117	29,501	0.004
	GO:0009521	C	Photosystem	11	622	113	29,501	0.004
	GO:0009579	C	Thylakoid	11	622	126	29,501	0.005
	GO:0016020	C	Membrane	103	622	3518	29,501	0.010
	GO:0044436	C	Thylakoid part	7	622	59	29,501	0.010
	GO:0044425	C	Membrane part	59	622	1801	29,501	0.013
	GO:0019898	C	Extrinsic to membrane	6	622	50	29,501	0.016
	GO:0009522	C	Photosystem I	5	622	35	29,501	0.018
	GO:0009654	C	Oxygen evolving complex	5	622	42	29,501	0.034
	GO:0031224	C	Intrinsic to membrane	47	622	1453	29,501	0.035
R-specific	GO:0055114	P	Oxidation reduction	93	740	2408	29,501	0.009
	GO:0006629	P	Lipid metabolic process	49	740	1024	29,501	0.009
	GO:0006633	P	Fatty acid biosynthetic process	12	740	108	29,501	0.009
	GO:0006631	P	Fatty acid metabolic process	13	740	130	29,501	0.009
	GO:0032787	P	Monocarboxylic acid metabolic process	15	740	176	29,501	0.011
	GO:0043436	P	Oxoacid metabolic process	31	740	580	29,501	0.011
	GO:0006082	P	Organic acid metabolic process	31	740	581	29,501	0.011
	GO:0019752	P	Carboxylic acid metabolic process	31	740	580	29,501	0.011
	GO:0042180	P	Cellular ketone metabolic process	31	740	584	29,501	0.011
	GO:0008610	P	Lipid biosynthetic process	25	740	470	29,501	0.040
	GO:0008152	P	Metabolic process	401	740	14,225	29,501	0.046
	GO:0016491	F	Oxidoreductase activity	103	740	2744	29,501	0.023
S-specific	GO:0015979	P	Photosynthesis	6	149	143	29,501	0.029
	GO:0034357	C	Photosynthetic membrane	6	149	117	29,501	0.001
	GO:0009521	C	Photosystem	6	149	113	29,501	0.001
	GO:0009579	C	Thylakoid	6	149	126	29,501	0.001

^aP, biological process; F, molecular function; C, cellular component

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ISSN: 1471-2164

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