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Table 1 Overview of the sequencing and assembly

From: De novo transcriptome analysis shows differential expression of genes in salivary glands of edible bird’s nest producing swiftlets

Sequencing parameters

Species and location

AFC

AFM

AMC

AA

Contig (n)

47,596

55,331

40,330

44,145

Contig N50 size

252

269

256

244

Total length of contig

10,865,350

12,946,212

9,192,670

9,807,398

Scaffolds (n)

28,471

32,337

25,185

28,051

Scaffold N50 size

1521

1560

1362

1143

Maximum length of scaffold

15,860

15,605

10,769

15,348

Minimum length of scaffold

100

100

100

100

Total length of scaffolds

13,284,125

15,888,505

11,131,881

11,571,111

GC percentage

46.72%

44.30%

47.94%

50.73%

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BMC Genomics

ISSN: 1471-2164

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