Fig. 5
From: Genome-scale analysis of regulatory protein acetylation enzymes from photosynthetic eukaryotes
Consensus phylogenetic tree and subcellular localization information for Class I HDA-family KDACs from across photosynthetic and select non-photosynthetic eukaryotes. Phylogenetic tree inference and subcellular localization information was performed as outlined in the Materials and Methods. Key nodes are labelled with branch support values from 2 phylogenetic inference programs: PhyML and PhyloBayes. Node A: (1.0/0.80); Node B: (1.0/0.79); Node C: (0.95/0.75); Node D: (1.0/0.75); Node E: (0.99/0.89); Node F: (0.89/0.97); Node G: (0.89/0.97). Consensus subcellular localization information was derived from 5 prediction algorithms. Different species types and subcellular localizations are shown. Proteins without a known localization have no demarcation. Stars (*) denote proteins part of a monocot only Class 1 HDA sub-class. All sequences used in phylogenetic tree generation are listed in Additional file 3, while compiled in silico subcellular localization data can be found in Additional file 5