Table 2 Diurnal and annual transcriptional phases for core clock genes in Douglas-fir needles, as compared to the angiosperm model Arabidopsis and the gymnosperm Cryptomeria japonica
Gene Description | Transcript or Locus | Diurnal Phase (clock time)a | Annual Phaseb | |||||
|---|---|---|---|---|---|---|---|---|
Douglas-fir | Arabidopsis | Cryptomeria | Douglas-fir | Arabidopsis | Cryptomeria | Experiment Day | Month | |
RVE1 (myb-like factor) | t005329 | AT5G37260 | Shoot-057-45 | 0:00 | 3:00 | 4:00 | 97 | Feb |
VIN3 (vernalization insensitive) | t005024 | AT5G57380 | N/A | 4:00 | 3:00 | N/A | 255 | Jul |
CCA1 (circadian-clock associated) | t001299 | AT1G01060 | N/A | 4:00 | 6:00 | N/A | n.s. c | - |
COP1 (constitutive photomorphogenic) | t007671 | AT4G11110 | HI9HAF202BWYA2 | 7:00 | 7:00 | 8:00 | 85 | Jan |
CRY1 (cryptochrome) | t007387 | AT4G08920 | AB894544 | 10:00 | 10:00 | 4:00 | 316 | Sep |
FT (flowering locus T) | t021120 | AT4G20370 | N/A | 12:00 | 0:00 | N/A | 12 | Nov |
ELF4.2 (early flowering 4) | t027724 | AT1G72630 | N/A | 12:00 | 15:00 | N/A | 255 | Jul |
LHY (late-elongated hypocotyl) | t004201 | AT2G46830 | AB894539 | 18:00 | 8:00 | 4:00 | n.s. | - |
GI (gigantea) | t001582 | AT1G22770 | AB894538 | 18:00 | 20:00 | 16:00 | 97 | Apr |
ZTL (Zeitlupe/F-box domain) | t005033 | AT2G18915 | AB894542 | 20:00 | 10:00 | 16:00 | n.s. | - |
TOC1 (timing of CAB expression) | t039766 | AT5G60100 | AB894541 | 20:00 | 19:00 | 20:00 | n.s. | - |
LUX (myb-like transcription factor) | t012828 | AT5G59570 | N/A | 20:00 | 18:00 | N/A | n.s. | - |
ELF4.3 (early flowering 4) | t029722 | AT2G06255 | N/A | 20:00 | 20:00 | N/A | 249 | Jul |