Identification of QTL with large effect on seed weight in a selective population of soybean with genome-wide association and fixation index analyses

Table 2 SNPs associated with seed weight identified by MLM based on 166 accessions grown at Beltsville, MD in 2012 and 2013

SNP ID	Allele	MAF	Fst	–log (p)		R²		Allelic effect (g)
SNP ID	Allele	MAF	Fst	2012	2013	2012	2013	2012	2013
Gm04_20336481	C:T	0.46	0.562	3.11	3.40	0.075	0.072	−3.99	−4.89
Gm04_20729591	A:G	0.46	0.569	3.01	3.09	0.069	0.073	−3.94	−4.64
Gm04_24276060	G:T	0.46	0.572	3.04	3.11	0.069	0.073	3.97	4.67
Gm04_27912357	C:T	0.43	0.602	4.06	4.52	0.096	0.111	−4.86	−6.00
Gm04_37010886	C:T	0.42	0.649	3.91	5.17	0.090	0.128	−5.22	−7.15
Gm17_2500016	C:T	0.28	0.574	3.27	3.91	0.073	0.092	−3.33	−4.27
Gm17_2500333	G:T	0.29	0.598	3.53	4.55	0.079	0.106	−3.51	−4.71
Gm17_8635426	C:T	0.41	0.635	3.33	5.41	0.075	0.132	−3.97	−6.15

ISSN: 1471-2164