Table 1 Comparison of FDR control between MAGeCK and PBNPA
From: A permutation-based non-parametric analysis of CRISPR screen data
Dataset | KBM7 | Toxoplasma | |||||
|---|---|---|---|---|---|---|---|
Selection direction | Algorithm | Ctrl1 vs ctrl2 | Treat1 vs treat2 | Ctrl1 vs ctrl2 | Ctrl1 vs ctrl3 | Treat1 vs treat2 | Treat1 vs treat3 |
Positive | MAGeCK | 50 | 18 | 0 | 1 | 0 | 1 |
PBNPA | 38 | 10 | 0 | 1 | 1 | 0 | |
Negative | MAGeCK | 0 | 3 | 4 | 2 | 6 | 28 |
PBNPA | 0 | 6 | 0 | 2 | 0 | 0 | |