Table 4 Haplotypes affecting MUM. The genomic location and haplotype frequency is provided in columns 1–5. The “homozygotes” section shows expected and observed homozygotes including statistical test. Information on carrier x carrier (C x C) matings and progeny is provided in the “matings” section. Effect on the phenotype is provided in the “Increase in mummified” section. Haplotype already listed in Table 2 have similar abbreviations
From: A systematic survey to identify lethal recessive variation in highly managed pig populations
Abbreviation | Chr | Start | End | Hap. Freq. | Homozygotes | Matings | Increase in mummified | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Expected | Observed | Exact binomial test | C x C matings | Genotyped progeny | Het. carrier progeny | Percent | P | |||||
LW4 | SSC1 | 295 | 295.5 | 5.1 | 37.5 | 2 | 3.05E-19 | 206 | 150 | 116 | 37.209 | 0.012 |
LW23 | SSC7 | 6.75 | 7.25 | 1 | 7.25 | 0 | 0.000954 | 17 | 29 | 13 | 256.522 | 0.028 |
LW17 | SSC18 | 36 | 40 | 4.3 | 6 | 2 | 5.22E-07 | 30 | 24 | 14 | 224.324 | 0.044 |
LW18 | SSC18 | 42.75 | 43.25 | 5.5 | 15.75 | 3 | 1.32E-07 | 127 | 63 | 43 | 375.757 | 1.67E-10 |
LW19 | SSC18 | 43 | 44 | 4.3 | 11.75 | 0 | 1.29E-06 | 88 | 47 | 32 | 479.412 | 2.118E-10 |