Comparative mitogenomic analysis of subterranean and surface amphipods (Crustacea, Amphipoda) with special reference to the family Crangonyctidae

Benito, Joseph B.; Porter, Megan L.; Niemiller, Matthew L.

doi:10.1186/s12864-024-10111-w

Table 1 Summary of mitogenomic characteristics, location, and habitat of subterranean and surface amphipods included for comparative mitogenome analyses

From: Comparative mitogenomic analysis of subterranean and surface amphipods (Crustacea, Amphipoda) with special reference to the family Crangonyctidae

Accession number	Organism	Family	Full length (bp)	A + T(%)	ATskew	GCskew	Habitat/locality	Surface vs. Subterranean	References
NC_026309	Brachyuropus grewingkii	Acanthogammaridae	17,118	62.2	0.003	-0.307	Lake Baikal, deep-water	Surface	Romanova et al. [76]
NC_019662	Pseudoniphargus daviui	Allocrangonyctidae	15,157	68.7	-0.002	-0.314	Spain, well	Subterranean	Bauzà-Ribot et al. [77]
NC_014492	Caprella mutica	Caprellidae	15,427	68.0	-0.023	-0.171	Shallow protected bodies of water in the Sea of Japan	Surface	Kilpert and Podsiadlowski [78]
NC_014687	Caprella scaura	Caprellidae	15,079	66.4	-0.015	-0.134	Western Indian Ocean	Surface	Ito et al. [79]
MN175619	Bactrurus brachycaudus	Crangonyctidae	14,661	63.9	0.004	-0.258	Fogelpole Cave, Monroe County, Illinois,	Subterranean	Benito et al. [51]
MN175623	Crangonyx forbesi	Crangonyctidae	15,469	67.9	0.061	-0.266	Unidentified spring, Monroe County, Illinois	Surface	Benito et al. [51]
MN175622	Stygobromus allegheniensis	Crangonyctidae	15,164	67.2	0.020	-0.261	Caskey Spring, Berkeley County, West Virginia	Subterranean	Benito et al. [51]
NC_030261	Stygobromus indentatus	Crangonyctidae	14,638	69.3	0.016	-0.270	Fort A.P. Hill, Caroline County, VA, seepage springs	Subterranean	Aunins et al. [50]
MN175620	Stygobromus pizzinii	Crangonyctidae	15,176	68.9	0.014	-0.248	Pimmit Run Seepage Spring, Arlington County, Virginia	Subterranean	Benito et al. [51]
KU869712	Stygobromus tenuis potomacus	Crangonyctidae	14,915	69.1	0.020	-0.275	Fort A.P. Hill, Caroline County, VA, seepage springs	Subterranean	Aunins et al. [50]
MN175621	Stygobromus tenuis potomacus	Crangonyctidae	14,712	69.1	0.022	-0.272	Pimmit Run Seepage Spring, Arlington County, Virginia	Subterranean	Benito et al. [51]
NC_033360	Eulimnogammarus cyaneus	Eulimnogammaridae	14,370	67.6	-0.019	-0.251	Lake Baikal, 0–3.5 m	Surface	Romanova et al. [76]
NC_023104	Eulimnogammarus verrucosus	Eulimnogammaridae	15,315	69.0	-0.008	-0.238	Lake Baikal, 0–12 m	Surface	Rivarola-Duarte et al. [80]
NC_025564	Eulimnogammarus vittatus	Eulimnogammaridae	15,534	67.4	-0.015	-0.222	Lake Baikal, 0–30 m	Surface	Romanova et al. [76]
NC_017760	Gammarus duebeni	Gammaridae	15,651	64.0	-0.016	-0.223	Intertidal zone of the North Atlantic region	Surface	Krebes and Bastrop [81]
NC_034937	Gammarus fossarum	Gammaridae	15,989	65.2	0.018	-0.261	Europe, freshwater	Surface	Macher et al. [82]
FR872382	Bahadzia jaraguensis	Hadziidae	14,657	69.7	0.037	-0.431	Dominican Rep, cave	Subterranean	Bauzà-Ribot et al. [77]
NC_013819	Onisimus nanseni	Lysianassidae	14,734	70.3	-0.004	-0.198	Below arctic pack ice near the Svalbard archipelago	Surface	Ki et al. [83]
NC_019654	Metacrangonyx dominicanus	Metacrangonyctidae	14,543	73.6	-0.016	-0.026	Dominican Rep, well	Subterranean	Bauzà-Ribot et al. [77]
NC_019655	Metacrangonyx goulmimensis	Metacrangonyctidae	14,507	69.7	-0.016	-0.028	Morocco, well	Subterranean	Bauzà-Ribot et al. [77]
NC_019656	Metacrangonyx ilvanus	Metacrangonyctidae	14,770	74.5	-0.014	-0.012	Italy, well	Subterranean	Bauzà-Ribot et al. [77]
NC_019658	Metacrangonyx longicaudus	Metacrangonyctidae	14,711	75.8	-0.014	-0.051	Morocco, well	Subterranean	Bauzà-Ribot et al. [77]
NC_013032	Metacrangonyx longipes	Metacrangonyctidae	14,113	76.1	-0.017	-0.035	Spain, Cala Figuera cave	Subterranean	Bauzà-Ribot et al. [77]
NC_019659	Metacrangonyx panousei	Metacrangonyctidae	14,478	76.1	-0.012	-0.051	Morocco, well	Subterranean	Bauzà-Ribot et al. [77]
NC_019660	Metacrangonyx remyi	Metacrangonyctidae	14,787	70.8	-0.014	0.017	Morocco, spring at maison forestière	Subterranean	Bauzà-Ribot et al. [77]
NC_019653	Metacrangonyx repens	Metacrangonyctidae	14,355	76.9	-0.025	-0.014	Spain, well	Subterranean	Bauzà-Ribot et al. [77]
HE860513	Metacrangonyx sp. 1 MDMBR-2012	Metacrangonyctidae	14,277	74.4	-0.019	-0.043	Not available	Subterranean	Bauzà-Ribot et al. [77]
HE860504	Metacrangonyx sp. 3 ssp. 1 MDMBR-2012	Metacrangonyctidae	14,644	75.1	-0.062	0.120	Not available	Subterranean	Bauzà-Ribot et al. [77]
HE860498	Metacrangonyx sp. 4 MDMBR-2012	Metacrangonyctidae	15,012	72.6	-0.009	0.005	Not available	Subterranean	Bauzà-Ribot et al. [77]
NC_019657	Metacrangonyx spinicaudatus	Metacrangonyctidae	15,037	74.8	0.010	-0.139	Morocco, well	Subterranean	Bauzà-Ribot et al. [77]
NC_033361	Gmelinoides fasciatus	Micruropodidae	18,114	65.9	-0.001	-0.303	Lake Baikal, 0–192 m	Surface	Romanova et al. [76]
NC_033362	Pallaseopsis kessleri	Pallaseidae	15,759	63.1	0.011	-0.182	Lake Baikal, 0–61 m	Surface	Romanova et al. [76]
JN827386	Gondogeneia antarctica	Pontogeneiidae	18,424	70.1	-0.006	-0.290	Coast of Antarctica, seawater	Surface	Shin et al. [84]
MG010370	Platorchestia japonica	Talitridae	14,780	72.5	0.015	-0.237	Pacific region esp. northeast Asia, terrestrial and supra-littoral habitats	Surface	Yang et al. [85]
MG010371	Platorchestia parapacifica	Talitridae	14,787	74.8	0.011	-0.253	Pacific region esp. northeast Asia, terrestrial and supra-littoral habitats	Surface	Yang et al. [85]

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