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Table 1 Global effects of breeds and days of gestation on endometrial gene expression

From: Sex and fetal genome influence gene expression in pig endometrium at the end of gestation

GENE

Full model

Additive model

D: Breed

D (D110/D90)

Breed (MS/LW)

 

FDR

FDR

FDR

FDR

FC

FDR

FC

GRB10

3.10 10-03

2.20 10-03

   

1.40 10-03

1.33

DHCR7

2.70 10-03

2.80 10-03

 

9.60 10-04

0.45

  

MEST

8.10 10-04

1.20 10-03

 

4.80 10-04

0.34

  

PEG10

1.40 10-02

1.00 10-02

 

4.50 10-03

0.47

  

TFPI2

3.60 10-02

1.70 10-02

 

3.60 10-02

1.30

  

SLC38A4

2.70 10-02

1.20 10-02

   

3.30 10-02

0.833

SLC22A3

3.60 10-02

1.90 10-02

 

1.30 10-02

0.73

  

IFG2R

2.50 10-02

 

0.095

    

NNAT

2.30 10-02

1.20 10-02

   

9.61 10-03

1.29

DCN

1.00 10-02

3.80 10-03

   

2.40 10-03

1.42

QPCT

1.80 10-02

4.40 10-02

 

2.80 10-02

1.26

  

AMPD3

2.30 10-04

1.00 10-04

 

5.20 10-03

0.83

3.60 10-04

1.3

NDP

9.00 10-04

1.00 10-02

0.055

5.20 10-03

0.61

  

NES

2.50 10-02

1.10 10-02

 

5.20 10-03

0.79

2.40 10-02

1.21

ASNS

 

4.50 10-02

 

5.20 10-03

1.1

  

CITED1

9.10 10-04

2.20 10-03

 

5.20 10-03

0.38

  

TSPAN33

3.50 10-03

2.40 10-03

   

1.60 10-03

0.72

CDKN1C

1.40 10-02

8.80 10-03

 

3.40 10-03

0.70

  

CREM

3.00 10-02

1.40 10-02

   

2.70 10-02

0.86

ASPSCR1

2.70 10-02

1.20 10-02

 

2.00 10-02

0.76

  

H19

2.20 10-03

2.80 10-03

 

9.60 10-04

0.45

  

SLC38A2

3.20 10-02

1.40 10-02

   

2.80 10-02

0.83

  1. The significant differential expressions of the 22 genes are summarized according to whether they are significant for the full model (corresponding to model 1: D x breed effects), the additive model (model 2: D + breed effects), the interaction model (between D and breeds), the gestation days model (model 3: D) and the breed model (model 4: MS/LW). The complete sampling design was used.
  2. The fold change (FC) and the Benjamini-Hochberg corrected p-value (FDR) are given for each significant differential gene expression.
  3. D: day of gestation; Breed (MS/LW): comparison between Meishan vs Large White breed; D (D110/D90): comparison between 110 and 90 days of gestation; D: Breed: interaction between days of gestation and breeds