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Table 2 Table showing differentially expressed genes in the resistant vs susceptible (Res-Sus) and unexposed vs susceptible pairwise comparisons. FDR =  < 0.05, FC =  > 2

From: Whole transcriptomic analysis reveals overexpression of salivary gland and cuticular proteins genes in insecticide-resistant Anopheles arabiensis from Western Kenya

Gene Type

Gene ID

Gene Description

Migori ACYP R-S

Migori DELTA R-S

Migori PMM

R-S

Migori UNEXP C-S

Siaya ACYP

R-S

Siaya DELTA R-S

Siaya PMM R-S

Siaya UNEXP

C-S

Cuticular proteins

AARA000220

cuticular protein

3.73

2.69

6.68

 

4.08

4.08

4.69

5.13

AARA001131

cuticular protein RR-2 family

 

8.06

2.07

 

4.86

2.57

  

AARA001390

cuticular protein

2.01

2.51

      

AARA001419

cuticular protein

0.39

  

0.36

 

0.46

0.20

0.22

AARA001471

cuticular protein RR-2 family

      

0.15

 

AARA002110

cuticular protein RR-2 family

      

0.26

 

AARA002342

CPR16

7.41

9.25

11.79

6.87

10.48

8.75

6.41

9.13

AARA002344

CPR15

2.83

4.35

4.14

3.32

3.34

3.34

2.22

2.89

AARA002509

cuticular protein RR-2 family

   

0.28

    

AARA002622

cuticular protein RR-1 family

2.10

3.73

3.05

 

2.71

2.68

  

AARA003675

cuticular protein RR-2 family

19.84

12.38

6.06

15.89

14.83

14.93

  

AARA003897

cuticular protein RR-1 family

4.99

8.94

6.50

5.10

7.62

5.78

4.47

4.89

AARA003899

cuticular protein RR-1 family

5.74

6.50

8.22

4.03

4.86

4.38

4.47

6.15

AARA003903

cuticular protein RR-1 family

8.75

13.36

12.55

5.39

9.71

11.16

6.92

6.15

AARA003986

cuticular protein

2.17

2.68

2.85

 

2.89

2.93

2.10

 

AARA004015

cuticular protein CPLCP12

    

2.14

   

AARA004816

CPR10

2.31

2.62

3.78

 

2.91

2.79

3.41

2.31

AARA005816

cuticular protein RR-2 family

  

3.27

     

AARA006486

cuticular protein TWDL family

      

4.35

4.96

AARA007248

cuticular protein RR-2 family

  

0.19

0.24

  

0.21

0.37

AARA007522

cuticular protein RR-1 family

0.44

   

0.43

 

0.24

0.42

AARA008818

cuticular protein RR-2 family

        

AARA009171

CPR59

      

0.34

0.41

AARA009194

cuticular protein RR-1 family

   

0.39

    

AARA011115

cuticular protein CPLCG family

3.41

16.22

  

9.00

2.71

  

AARA011117

cuticular protein CPLCG family

 

17.51

      

AARA011120

cuticular protein CPLCG family

4.56

5.62

8.22

4.14

4.99

4.63

4.44

 

AARA011324

cuticular protein 3 from 51 aa family

  

0.06

0.10

 

0.17

0.11

0.05

AARA015614

CPR9

3.51

3.41

3.46

3.89

4.20

3.43

4.41

6.28

AARA015776

cuticular protein RR-2 family

 

0.01

0.06

0.07

0.10

 

0.04

0.09

AARA016140

cuticular protein RR-1 family

6.06

6.11

15.14

5.35

8.28

6.54

7.67

6.02

AARA016147

cuticular protein RR-1 family

4.89

4.53

5.28

 

3.56

3.92

 

4.69

AARA016150

cuticular protein RR-1 family

2.66

3.03

2.55

3.81

  

2.50

2.27

AARA016552

CPAP3-A1c

2.36

2.81

 

3.41

2.41

3.05

  

AARA016553

CPAP3-A1b

4.06

3.01

3.97

4.76

3.01

3.63

3.29

3.10

AARA017512

cuticular protein CPLCG family

 

7.26

2.57

 

4.35

3.46

  

AARA017766

cuticular protein RR-2 family

        

AARA000730

chitin deacetylase 1 isoform X2

 

2.58

2.73

2.58

2.31

2.30

2.04

 

AARA003900

larval cuticle LCP-30-like

4.53

8.94

5.66

3.94

4.50

5.46

4.79

3.61

AARA005143

cuticle 1

   

0.32

2.10

 

0.33

0.34

AARA005763

chitinase

2.28

3.01

2.11

 

2.41

2.16

 

2.23

AARA005785

pupal cuticle 36-like isoform X1

  

5.50

   

2.51

4.82

AARA005787

pupal cuticle 36-like

5.10

4.92

4.79

2.60

4.92

5.35

5.13

5.28

AARA005953

chitin-binding domain cbd-1-like

  

2.46

     

AARA005955

probable chitinase 10

 

0.25

0.14

 

0.35

0.20

0.28

 

AARA007063

endochitinase-like

   

16.22

    

AARA007329

chitinase

99.04

184.82

137.19

67.18

205.07

191.34

294.07

101.83

AARA007725

cuticle -like

2.71

3.51

2.20

 

2.14

3.51

3.05

 

AARA008295

chitinase

        

AARA008306

probable chitinase 10

  

2.79

 

2.53

 

2.93

 

AARA008307

chitinase partial

  

3.20

 

3.41

2.11

3.53

 

AARA009226

chitinase

2.08

2.57

2.75

 

2.25

2.75

2.27

 

AARA009427

endochitinase A

 

0.45

 

0.49

    

AARA010757

venom allergen

2.62

2.55

2.19

 

3.23

3.12

  

AARA011020

probable chitinase 10

4.00

4.86

3.73

   

3.03

3.05

AARA017101

endocuticle structural glyco ABD-4

0.38

0.26

0.09

0.50

0.12

0.17

0.07

0.05

AARA017258

probable endochitinase

       

5.62

AARA017495

probable chitinase 10

13.55

     

7.26

18.25

AARA017497

probable chitinase 10

53.08

57.28

74.03

 

42.52

57.28

48.17

60.13

AARA017618

endochitinase-like isoform X2

2.31

    

2.22

3.18

3.20

AARA017619

endochitinase-like

    

3.07

 

4.59

 

AARA017620

chitinase

3.61

3.03

3.36

 

3.71

4.92

7.94

5.66

AARA017621

endochitinase-like

3.61

3.43

3.66

2.30

3.39

4.23

4.99

4.17

AARA017622

chitinase

  

2.14

2.03

2.01

   

AARA017810

chitin-binding domain cbd-1-like

3.66

 

5.06

2.51

3.05

3.18

3.86

2.97

AARA017994

chitinase

79.34

     

46.21

 

Salivary Gland proteins

AARA001015

salivary 15

 

3.18

2.35

2.46

2.01

   

AARA001016

salivary 15

 

2.83

2.03

     

AARA007686

kDa salivary

7.21

6.19

10.63

10.20

6.59

6.45

7.73

7.73

AARA008319

probable salivary secreted peptide

0.49

  

0.33

0.40

0.44

0.43

 

AARA008506

salivary gland protein

2.62

2.38

2.97

 

2.57

2.45

2.03

2.13

AARA009912

salivary secreted peptide

  

2.08

     

AARA010474

kDa salivary

2.69

 

4.23

2.64

   

2.95

AARA011261

salivary hyp10

3.73

2.38

4.06

3.86

2.43

2.46

2.60

3.10

AARA011262

salivary 12

4.76

3.23

5.82

5.28

3.10

3.29

4.14

4.03

AARA015881

salivary secreted peptide

2.75

 

2.14

 

2.19

2.58

2.25

2.13

AARA016176

sg2a salivary

18.00

9.58

12.82

19.16

9.85

14.72

11.16

8.11

AARA016215

probable salivary secreted peptide

  

3.12

   

2.38

3.61

AARA017300

secreted salivary gland

 

0.41

0.33

0.10

  

0.35

0.18

AARA017669

kDa salivary secreted

5.06

4.06

7.36

2.01

5.98

4.35

6.68

7.01

AARA018091

kDa salivary

5.24

6.82

5.94

3.43

4.29

8.34

8.94

9.32

AARA001829

TRIO salivary gland protein

3.29

3.66

3.05

2.43

3.01

2.48

2.41

2.01

AARA008387

probable salivary secreted peptide

6.87

4.08

6.06

6.59

3.51

3.97

4.69

4.20

AARA009227

basic tail-containing salivary secreted peptide

2.38

2.85

      

AARA009957

salivary gland protein

4.96

     

2.41

5.13

AARA010442

salivary gland protein 1-like

3.36

 

3.78

2.81

3.94

3.53

2.91

2.28

AARA011280

D7 long form salivary protein

  

2.22

2.91

    

AARA014717

salivary gland protein

8.57

5.28

7.16

9.45

6.06

6.41

6.32

6.87

AARA015664

14.5 kDa salivary peptide

2.08

   

2.03

2.14

2.30

 

AARA016088

salivary gland protein 7-like

3.53

4.14

3.27

2.50

2.68

2.50

2.53

2.60

AARA016089

salivary gland protein

 

2.45

      

AARA016177

salivary gland protein 2-like

4.76

4.72

4.08

4.44

3.05

3.36

3.41

 

AARA016193

SG8

  

2.03

     

AARA016208

salivary gland protein

2.57

2.16

2.58

2.53

  

2.68

2.69

AARA016220

salivary gland protein

2.16

2.85

2.66

 

2.07

 

2.06

2.19

AARA016221

salivary gland protein 1-like

2.95

3.56

3.94

3.48

2.83

2.91

2.95

2.53

AARA016222

salivary gland protein 1-like

2.07

2.33

2.46

 

2.03

 

2.00

2.23

AARA016223

salivary gland protein 1-like

3.12

3.58

4.11

3.03

3.14

2.68

3.25

2.36

AARA016236

D7 short form salivary protein

4.06

6.77

3.81

4.47

4.00

3.18

3.12

2.79

AARA016237

D7 short form salivary protein

30.70

46.21

40.50

39.12

31.78

27.28

33.13

26.72

AARA016239

D7 short form salivary protein

2.77

3.66

2.99

2.97

2.51

2.46

2.35

 

AARA016240

D7 short form salivary protein

 

2.31

2.01

     

AARA016540

D7L2

2.51

3.66

2.91

2.03

2.64

2.36

2.06

 

AARA016541

D7L1

2.79

4.86

3.16

2.77

3.36

2.75

2.23

 

Cytochrome P450s monooxygenases

AARA000237

CYP9M1

2.19

2.91

2.62

3.29

2.87

2.68

3.63

 

AARA002507

CYP9K1

2.60

 

3.53

2.60

3.66

2.95

3.05

3.41

AARA002563

CYP4G17

  

2.25

     

AARA003376

CYP9J5

        

AARA003631

CYP325D1

0.26

0.17

0.29

0.46

0.20

0.21

0.19

0.28

AARA003697

CYP303A1

  

0.38

     

AARA004308

CYP325K1

  

4.11

   

2.97

 

AARA004446

CYP314A1

 

0.41

 

0.40

    

AARA004676

CYP6AA1

    

2.07

2.06

2.07

 

AARA005652

CYP49A1

       

0.38

AARA006801

CYP325H1

0.26

0.19

0.25

 

0.15

0.27

0.16

0.36

AARA007526

CYP302A1

0.40

0.48

 

0.30

0.49

 

0.36

0.41

AARA008771

CYP4C35

0.28

0.31

0.27

0.33

0.25

0.32

0.30

0.33

AARA008772

CYP4C36

2.33

       

AARA008776

CYP4C27

2.79

2.69

2.28

 

2.46

2.53

2.57

 

AARA008798

CYP306A1

  

0.38

0.33

0.48

0.41

0.37

0.40

AARA010190

CYP4AA1

  

2.23

2.13

   

2.13

AARA011200

CYP4H17

    

2.11

 

2.77

 

AARA011787

CYP4G16

2.04

       

AARA015586

CYP9J4

   

2.22

    

AARA015607

CYP307A1

3.66

3.23

  

3.86

3.43

3.78

 

AARA015620

CYP9L

 

0.41

      

AARA015621

CYP9L1

3.32

2.83

3.29

2.77

3.03

3.32

3.07

3.16

AARA015635

CYP4H15

2.51

 

2.14

2.13

2.19

   

AARA015642

CYP6M3

2.75

 

3.29

 

3.97

2.95

4.99

4.20

AARA015644

CYP6M2

4.20

 

8.34

 

9.58

5.54

14.93

6.50

AARA015661

CYP4J10

 

0.30

 

0.34

 

0.35

  

AARA015669

CYP4H19

   

32.90

    

AARA015787

CYP6P3

 

0.48

 

0.40

    

AARA015789

CYP6P4

4.53

 

5.28

 

8.51

5.39

5.94

9.00

AARA015791

CYP6P2

2.38

 

3.27

   

2.28

3.16

AARA015794

CYP6Z1

  

2.41

 

2.25

2.06

2.71

2.46

AARA015795

CYP6Z3

2.20

 

3.05

 

3.68

2.60

4.79

2.03

AARA015844

CYP4H27

   

2.03

    

AARA015895

CYP9M2

0.24

 

0.42

0.47

0.41

0.34

0.41

 

AARA016565

CYP4D17

   

0.37

0.44

0.46

0.38

0.35

AARA015793

cytochrome P450 6d3-like

   

0.42

  

2.46

 

Glutathion-S-transferase

AARA002574

GSTT2

  

2.04

    

2.03

AARA005891

GSTS1

  

2.19

 

2.41

2.11

  

AARA008729

GSTE8

2.50

 

2.41

2.22

2.17

2.23

2.27

 

AARA008732

GSTE2

       

0.34

AARA008734

GSTE7

2.62

 

3.89

3.43

2.77

3.12

3.05

3.23

AARA009632

GSTD7

2.45

 

3.51

2.19

2.97

2.50

3.25

2.79

AARA011689

GSTU1

2.22

  

2.17

2.81

2.55

 

2.03

AARA015648

GSTE4

3.81

3.16

3.20

2.77

4.26

3.58

3.56

3.01

AARA015649

GSTE5

 

2.55

2.36

2.41

  

2.14

 

AARA015681

GSTMS2

    

2.06

 

2.04

 

AARA015682

GSTMS1

  

2.39

 

2.22

 

2.58

2.36

AARA015729

GSTE1

0.26

0.17

0.20

0.14

0.26

0.21

0.19

0.16

AARA015763

GSTD12

2.57

 

2.89

2.31

2.41

2.28

2.73

 

AARA015764

GSTD3

      

2.06

 

AARA015765

GSTD10

  

3.23

  

7.06

  

Carboxylesterase

AARA001215

carboxylesterase

0.46

0.35

   

0.44

  

AARA004790

carboxylesterase clade H

3.53

2.99

3.73

4.17

3.94

3.81

3.71

3.29

AARA016305

carboxylesterase

  

2.31

     

AARA016468

carboxylesterase

8.69

8.88

12.13

8.88

10.13

11.71

8.51

8.17

AARA017720

carboxylesterase

        

AARA018213

carboxylesterase

   

2.04

    

AARA018338

carboxylesterase

        

AARA005879

liver carboxylesterase 4

0.40

 

0.44

0.44

0.40

 

0.27

0.41

AARA016024

Carboxylic ester hydrolase

0.49

   

0.47

0.41

  

AARA016026

Carboxylic ester hydrolase

2.50

2.16

2.31

  

2.79

  

AARA017332

Carboxylic ester hydrolase

  

2.30

   

3.58

 
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