Table 1 In-house mock communities’ components and genomic characteristics
Mock 1 | ||||||||
DSM | Name | Refseq | 16S rRNA gene copy number | Genome size (bp) | Mass of DNA per genome1 | Nº genomes per ng | Nº 16S rRNA gene copies per ng | RA2 (%) |
DSM 23056 | Actinomyces oris | NZ_CP066060.1 | 3 | 3,184,721 | 3.436E-06 | 2.91 × 105 | 8.73 × 105 | 12.05 |
DSM 20482 | Fusobacterium nucleatum | NZ_LN831027.1 | 5 | 2,443,126 | 2.636E-06 | 3.79 × 105 | 1,9 × 106 | 26.19 |
DSM 43762 | Rothia dentocariosa | NC_014643.1 | 3 | 2,506,025 | 2.704E-06 | 3.7 × 105 | 1.1 × 106 | 15.32 |
DSM 20627 | Streptococcus oralis | NZ_LR134336.1 | 4 | 1,931,548 | 2.084E-06 | 4.8 × 105 | 1.9 × 106 | 26.50 |
DSM 17713 | Neisseria sicca | NZ_CP072524.1 | 4 | 2,566,407 | 2.769E-06 | 3.61 × 105 | 1.44 × 106 | 19.94 |
Total | 7.2 × 106 | 100 | ||||||
Mock 2 | ||||||||
DSM | Name | Refseq | 16S rRNA gene copy number | Genome size (bp) | Mass of DNA per genome1 | Nº genomes per ng | Nº 16S rRNA gene copies per ng | RA2 (%) |
DSM 23056 | Actinomyces oris | NZ_CP066060.1 | 3 | 3,184,721 | 3.436E-06 | 2.91 × 105 | 8.73 × 105 | 10.79 |
DSM 20482 | Fusobacterium nucleatum | NZ_LN831027.1 | 5 | 2,443,126 | 2.636E-06 | 3.79 × 105 | 1,9 × 106 | 23.44 |
DSM 43762 | Rothia dentocariosa | NC_014643.1 | 3 | 2,506,025 | 2.704E-06 | 3.7 × 105 | 1.1 × 106 | 13.71 |
DSM 20627 | Streptococcus oralis | NZ_LR134336.1 | 4 | 1,931,548 | 2.084E-06 | 4.8 × 105 | 1.9 × 106 | 23.71 |
DSM 20627 | Streptococcus mutans | NZ_LS483349.1 | 5 | 2,019,343 | 2.178E-06 | 4.6 × 105 | 2.29 × 106 | 28.35 |
Total | 8.09 × 106 | 100 | ||||||