Table 2 Number of reads sequenced and annotated by platform and sample type
Platform | Sample Type | Nº Reads Mean (SD) | Filtered1 Mean (SD) | Reads length mean | Total ASV2 | Total Genera2 | % reads assigned to Genera | % reads assigned to Species |
|---|---|---|---|---|---|---|---|---|
Illumina | Mock 1 | 91,804 (16,260) | 75,620 (13,350) | 417.5 bp | 7 | 6 | 100 | 58.33 |
Mock 2 | 90,301 (856) | 62,444 (44) | 419.5 bp | 15 | 5 | 100 | 69.27 | |
Saliva | 94,079 (14,632) | 70,661 (10,323) | 418.1 bp | 1414 | 138 | 96.46 | 52.79 | |
Subgingival | 110,328 (44,092) | 84,896 (36,315) | 415.3 bp | 1328 | 153 | 95.5 | 55.73 | |
Faeces | 212,795 (122,662) | 157,113 (94,087) | 408.5 bp | 1113 | 201 | 89.49 | 53.13 | |
PacBio | Mock 1 | 26,065 (1431) | 15,536 (870) | 1455.5 bp | 14 | 5 | 100 | 100 |
Mock 2 | 33,620 (7213) | 19,821 (2565) | 1469 bp | 17 | 4 | 99.99 | 99.73 | |
Saliva | 21,151 (12,907) | 17,444 (11,848) | 1459.33 bp | 2247 | 113 | 97.25 | 74.91 | |
Subgingival | 13,982 (2163) | 10,103 (2796) | 1456.44 bp | 1380 | 99 | 95.41 | 72.80 | |
Faeces | 12,702 (2185) | 7350 (2312) | 1452.25 bp | 796 | 97 | 89.72 | 61.93 |