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Table 1 ASW genes significantly differentially expressed in the parasitism analysis and with BlastX annotation

From: Immune system modulation & virus transmission during parasitism identified by multi-species transcriptomics of a declining insect biocontrol system

Trinity Gene ID

LFC

Padj

BlastX Annotation

Sequence identity (%)

BlastX

E-value

Parasitised TPM

Unparasitised TPM

TRINITY_DN46396_c0_g1

23.55

8.42E-07

translation elongation factor 2-like

(Agrilus planipennis)

91.67

9.57E-38

44.12

23.22

TRINITY_DN35637_c0_g1

14.48

5.23E-49

serine protease inhibitor 3/4-like isoform X5

(Megalopta genalis)

45.69

7.75E-20

3885.44

0.22

TRINITY_DN35637_c0_g2

14.13

2.20E-62

teratocyte serpin II

(Cotesia flavipes)

47.22

8.95E-18

8325.17

0.41

TRINITY_DN78148_c0_g1

8.11

1.85E-30

Apolipophorin

(Cotesia flavipes)

67.78

4.86E-35

49.59

0

TRINITY_DN3215_c1_g1

3.45

3.47E-03

defensin, isoforms B and C

(Sitophilus oryzae)

72.73

3.97E-33

873.85

204.45

TRINITY_DN3452_c0_g1

1.85

6.99E-03

apolipoprotein D-like isoform X1

(Anthonomus grandis grandis)

81.85

5.05E-156

203.50

51.32

TRINITY_DN6567_c0_g1

-3.10

3.41E-02

putative leucine-rich repeat-containing protein DDB_G0290503

(Anthonomus grandis grandis)

77.38

0

13.91

96.26

TRINITY_DN3087_c3_g1

-3.24

2.44E-02

flightin isoform X2

(Anthonomus grandis grandis)

81.08

8.15E-54

59.13

388.52

TRINITY_DN3943_c0_g1

-3.55

2.68E-02

troponin C, isoallergen Bla g 6.0101-like isoform X1

(Sitophilus oryzae)

90.85

1.66E-95

15.17

179.43

TRINITY_DN18461_c0_g1

-3.96

2.09E-04

myosin light chain alkali-like

(Sitophilus oryzae)

78.85

4.84E-64

188.00

772.60

TRINITY_DN10508_c0_g1

-4.59

1.26E-07

paxillin isoform X1

(Dendroctonus ponderosae)

57.88

2.06E-116

2.97

68.54

TRINITY_DN6332_c1_g1

-7.30

6.63E-08

paramyosin, short form-like

(Dendroctonus ponderosae)

58.59

3.90E-87

0.07

14.85

  1. DESeq2 Log2 fold-changes (LFC) and adjusted P-values (Padj) are reported from DESeq2 analysis, BlastX annotation is from a search against the non-redundant database, and mean TPM values for experimental groups were calculated from Salmon output. A positive LFC indicates upregulated expression in ASW that were parasitised by M. hyperodae