Table 1 Statistics of structural variants in Nanchukmacdon and Landrace genome. NSV: Nanchukmacdon-specific variant, DEL: Deletion, INS: Insertion, DUP: Duplication, INV: Inversion
Breed | Type | Total number | Median length (bp) | Total length (bp) | No. of NSVs |
|---|---|---|---|---|---|
Nanchukmacdon | DEL | 15,636 | 288 | 12,662,862 | 7,012 |
DUP | 96 | 5,297 | 859,163 | 70 | |
INS | 14,986 | 281 | 7,038,645 | 9,785 | |
INV | 66 | 1,576.5 | 347,275 | 31 | |
Landrace | DEL | 28,573 | 151 | 10,049,685 | - |
DUP | 343 | 752 | 511,567 | - | |
INS | 33,361 | 127 | 7,912,026 | - | |
INV | 96 | 1,161 | 798,021 | - |