Transcription factor expression landscape in Drosophila embryonic cell lines

Drewell, Robert A.; Klonaros, Daniel; Dresch, Jacqueline M.

doi:10.1186/s12864-024-10241-1

BMC Genomics

Table 1 Upregulated DEGs ranked by log₂ fold change

From: Transcription factor expression landscape in Drosophila embryonic cell lines

Gene Symbol	Gene ID	KC TPM	S2 TPM	KC Read Count	S2 Read Count	log2 (KC / S2)
nerfin-2	41235	7.99	0	269	0	9.29
bcd	40830	4.84	0	168	0	8.57
dysf	43174	176.21	0.54	8689	26	8.32
croc	40374	5.63	0.03	181	1	7.78
Sox15	36575	16.51	0.12	835	6	7.16
zfh2	43795	1.77	0.01	253	2	7.11
toy	43833	21.78	0.19	773	6	6.83
CG17801	42144	6.59	0.06	107	1	6.69
CG8301	41160	83.34	0.81	3559	35	6.65
Blimp-1	38638	1.16	0.02	71	1	6.49
CG4328	39405	0.78	0	21	0	5.93
cad	35341	1.36	0.03	46	1	5.74
CG43689	31353	0.34	0	32	0	4.75
CG10654	39428	1.18	0.06	26	1	4.52
fd19B	33010	2.8	0.15	36	2	4.19
bab2	44254	8.01	0.44	574	32	4.16
CG31875	318996	15.58	0.97	211	13	3.98
SoxN	44275	0.77	0.05	43	3	3.91
l(3)neo38	41423	5.54	0.37	327	17	3.90
cnc	42743	152.08	13.13	10551	1051	3.51
vis	36372	8.77	0.87	213.59	22.28	3.31
CG6175	39271	15.98	1.65	870	86	3.24
CG14441	31611	1.1	0.15	91	12	2.84
klu	39228	2.85	0.41	186	24	2.80
CG6765	38971	6.3	0.99	295.9	46.86	2.64
pdm3	35813	1.45	0.25	104	16	2.50
Dlip3	53579	9.4	1.66	186	33	2.48
ci	43767	1.69	0.3	116	22	2.46
HmgD	37481	3932.31	805.31	51211	10794	2.26
CG13204	36227	15.55	3.75	396	93	2.02
cyc	40162	58.44	15.56	1283	344	1.88
cbt	33224	267.85	72.71	7564	2049	1.85
hng2	41056	41.25	11.82	662	191	1.78
CG11398	31070	4.35	1.3	90	40	1.72
Irbp18	39243	91.21	27.43	682	204	1.71
Hmg-2	37407	47.21	15.15	851	275	1.61
Usf	31384	21.31	7.16	909	309	1.55
Ets21C	33229	39.01	13.51	1423	521	1.50
topi	41199	13.77	4.82	502	177	1.49
CG6808	41394	21.09	7.46	410	146	1.47
CkIIalpha-i1	39721	12.3	4.5	263	97	1.42
Pdp1	45588	70.72	26.36	4358	1625	1.40
foxo	41709	24.84	9.28	1276	486	1.39
CG6163	39274	9.17	3.48	204	79	1.37
Eip78C	40345	11.53	4.43	594	237	1.35
p53	2768677	46.45	18.29	937	383	1.32
Atf3	43867	21.86	8.9	2136	878	1.27
jigr1	43093	39.95	16.48	893	370	1.25
sima	43580	65.16	27.2	4843	2118	1.23
CG10431	35157	1.53	0.7	61	26	1.09
CG8765	40147	35.41	16.43	1506	704	1.08
Coop	35677	26.85	12.47	539	251	1.08
brk	31665	25	11.74	1103	522	1.06
cwo	44669	52.42	24.78	3354	1632	1.05
Myc	31310	72.31	34.36	6538	3448	1.05
CG11456	40309	10.65	5.08	215	103	1.04
Elba2	33442	6.32	3.07	127	62	1.02

The 57 genes expressed at significantly higher levels in Kc cells when compared to S2 cells (Kc up) are listed with the read count, TPM values and log₂ expression ratio for the two cell types

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ISSN: 1471-2164

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