Table 3 Gene conservatism analysis
From: Identification of different myofiber types in pigs muscles and construction of regulatory networks
Name | Type | Identity | Similar residues | Gap |
|---|---|---|---|---|
CHRNB1 | mRNA | 83.95% (2087/2486) | - | 35.02% (1340/3826) |
Protein | 94.65% (478/505) | 4.16% (21/505) | 0.00% (0/505) | |
COL1A1 | mRNA | 94.18% (5569/5913) | - | 5.42% (339/6252) |
Protein | 97.33% (1424/1463) | 2.60% (38/1463) | 2.34% (35/1498) | |
COL6A3 | mRNA | 85.07% (8460/9945) | - | 7.51% (808/10,753) |
Protein | 84.36% (2610/3094) | 12.64% (391/3094) | 4.57% (148/3242) | |
MFN2 | mRNA | 84.89% (3675/4329) | - | 11.24% (548/4877) |
Protein | 98.68% (747/757) | 1.19% (9/757) | 0.00% (0/757) | |
MYBPC1 | mRNA | 91.13% (3606/3957) | - | 15.97% (752/4709) |
Protein | 89.39% (1078/1206) | 9.29% (112/1206) | 3.37% (42/1248) | |
MYH6 | mRNA | 94.07% (5472/5817) | - | 12.28% (814/6631) |
Protein | 95.98% (1860/1938) | 3.15% (61/1938) | 5.56% (114/2052) | |
TNNT1 | mRNA | 77.64% (736/948) | - | 52.62% (1053/2001) |
Protein | 86.69% (228/263) | 7.22% (19/263) | 11.74% (35/298) |