From: Split Pool Ligation-based Single-cell Transcriptome sequencing (SPLiT-seq) data processing pipeline comparison
Pipeline
Mean gene per cell
Median gene per cell
Mean umi per cell
Median umi per cell
N cells
alevin-fry
2785.3
2923
7297.8
6991.9
15620
splitpipe
2290.6
2283
6142.6
5493
15748
STARsolo
2176.1
2152
5689.2
5051
15875