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Fig. 2 | BMC Genomics

Fig. 2

From: PPanG: a precision pangenome browser enabling nucleotide-level analysis of genomic variations in individual genomes and their graph-based pangenome

Fig. 2

Visualization of sd-1 gene region in the reference genome IRGSP-1.0 and another genome PR106. The path of PR106 skips a long 382 bp node. The SequenceTubeMap view clearly shows that this skipped node in PR106 represents a deletion in exons 1, 2 and intron 1 of gene OS01g66100 in IRGSP-1.0 and two genes are annotated in PR106. (a) Original visualization in PPanG. The deletion of 382 bp node is locally amplified. (b) Detailed mapping of IRGSP-1.0 and PR106 in graph view and linear view. (c) Ridgeline plot of plant height data between sd-1 present and absent groups. The p-value = 1.7e-6. Wilcoxon rank-sum test is performed to test the significance of difference

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BMC Genomics

ISSN: 1471-2164

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