Volume 13 Supplement 1

Selected articles from the Tenth Asia Pacific Bioinformatics Conference (APBC 2012)

Proceedings

Edited by Yi-Ping Phoebe Chen and Peer Bork

The Tenth Asia Pacific Bioinformatics Conference (APBC 2012). Go to conference site.

Melbourne, Australia

17-19 January 2012

  1. Proceedings

    Improving ChIP-seq peak-calling for functional co-regulator binding by integrating multiple sources of biological information

    Chromatin immunoprecipitation coupled with massively parallel sequencing (ChIP-seq) is increasingly being applied to study genome-wide binding sites of transcription factors. There is an increasing interest in...

    Hatice Ulku Osmanbeyoglu, Ryan J Hartmaier, Steffi Oesterreich and Xinghua Lu

    BMC Genomics 2012 13(Suppl 1):S1

    Published on: 17 January 2012

  2. Proceedings

    Quantification and clustering of phenotypic screening data using time-series analysis for chemotherapy of schistosomiasis

    Neglected tropical diseases, especially those caused by helminths, constitute some of the most common infections of the world's poorest people. Development of techniques for automated, high-throughput drug scr...

    Hyokyeong Lee, Asher Moody-Davis, Utsab Saha, Brian M Suzuki, Daniel Asarnow, Steven Chen, Michelle Arkin, Conor R Caffrey and Rahul Singh

    BMC Genomics 2012 13(Suppl 1):S4

    Published on: 17 January 2012

  3. Proceedings

    Learning generative models of molecular dynamics

    We introduce three algorithms for learning generative models of molecular structures from molecular dynamics simulations. The first algorithm learns a Bayesian-optimal undirected probabilistic model over user-...

    Narges Sharif Razavian, Hetunandan Kamisetty and Christopher J Langmead

    BMC Genomics 2012 13(Suppl 1):S5

    Published on: 17 January 2012

  4. Proceedings

    Identifying regulational alterations in gene regulatory networks by state space representation of vector autoregressive models and variational annealing

    In the analysis of effects by cell treatment such as drug dosing, identifying changes on gene network structures between normal and treated cells is a key task. A possible way for identifying the changes is to...

    Kaname Kojima, Seiya Imoto, Rui Yamaguchi, André Fujita, Mai Yamauchi, Noriko Gotoh and Satoru Miyano

    BMC Genomics 2012 13(Suppl 1):S6

    Published on: 17 January 2012

  5. Proceedings

    A mixture framework for inferring ancestral gene orders

    Inferring gene orders of ancestral genomes has the potential to provide detailed information about the recent evolution of species descended from them. Current popular tools to infer ancestral genome data (suc...

    Yiwei Zhang, Fei Hu and Jijun Tang

    BMC Genomics 2012 13(Suppl 1):S7

    Published on: 17 January 2012

  6. Proceedings

    A model for biased fractionation after whole genome duplication

    Paralog reduction, the loss of duplicate genes after whole genome duplication (WGD) is a pervasive process. Whether this loss proceeds gene by gene or through deletion of multi-gene DNA segments is controversi...

    David Sankoff, Chunfang Zheng and Baoyong Wang

    BMC Genomics 2012 13(Suppl 1):S8

    Published on: 17 January 2012

  7. Proceedings

    Construction and analysis of a plant non-specific lipid transfer protein database (nsLTPDB)

    Plant n on-s pecific l ipid t ransfer p roteins (nsLTPs) are small and basic proteins. Recently, nsLTPs have been reported involved in many physiological functions such as mediating phospholipid transfer, partici...

    Nai-Jyuan Wang, Chi-Ching Lee, Chao-Sheng Cheng, Wei-Cheng Lo, Ya-Fen Yang, Ming-Nan Chen and Ping-Chiang Lyu

    BMC Genomics 2012 13(Suppl 1):S9

    Published on: 17 January 2012

  8. Proceedings

    miRNA arm selection and isomiR distribution in gastric cancer

    MicroRNAs (miRNAs) are small non-protein-coding RNAs. miRNA genes need several biogenesis steps to form function miRNAs. However, the precise mechanism and biology involved in the mature miRNA molecules are no...

    Sung-Chou Li, Yu-Lun Liao, Meng-Ru Ho, Kuo-Wang Tsai, Chun-Hung Lai and Wen-chang Lin

    BMC Genomics 2012 13(Suppl 1):S13

    Published on: 17 January 2012

  9. Proceedings

    Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics

    Soybean Knowledge Base (SoyKB) is a comprehensive all-inclusive web resource for soybean translational genomics. SoyKB is designed to handle the management and integration of soybean genomics, transcriptomics,...

    Trupti Joshi, Kapil Patil, Michael R Fitzpatrick, Levi D Franklin, Qiuming Yao, Jeffrey R Cook, Zheng Wang, Marc Libault, Laurent Brechenmacher, Babu Valliyodan, Xiaolei Wu, Jianlin Cheng, Gary Stacey, Henry T Nguyen and Dong Xu

    BMC Genomics 2012 13(Suppl 1):S15

    Published on: 17 January 2012

Portable peer review

 The editors of BMC Genomics support initiatives that expedite the peer review process and are happy to consider manuscripts that have been reviewed in Axios Review or Peerage of Science. Please indicate in your cover letter if this applies to your manuscript.

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