Volume 9 Supplement 2

IEEE 7th International Conference on Bioinformatics and Bioengineering at Harvard Medical School

Research

Edited by Mary Qu Yang, Jack Y Yang, Hamid R Arabnia and Youping Deng

IEEE 7th International Conference on Bioinformatics and Bioengineering at Harvard Medical School. Go to conference site.

Boston, MA, USA

14-17 October 2007

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  1. Introductory Review

    Genomics, molecular imaging, bioinformatics, and bio-nano-info integration are synergistic components of translational medicine and personalized healthcare research

    Supported by National Science Foundation (NSF), International Society of Intelligent Biological Medicine (ISIBM), International Journal of Computational Biology and Drug Design and International Journal of Fun...

    Jack Y Yang, Mary Qu Yang, Hamid R Arabnia and Youping Deng

    BMC Genomics 2008 9(Suppl 2):I1

    Published on: 16 September 2008

  2. Research

    The unfoldomics decade: an update on intrinsically disordered proteins

    Our first predictor of protein disorder was published just over a decade ago in the Proceedings of the IEEE International Conference on Neural Networks (Romero P, Obradovic Z, Kissinger C, Villafranca JE, Dunker ...

    A Keith Dunker, Christopher J Oldfield, Jingwei Meng, Pedro Romero, Jack Y Yang, Jessica Walton Chen, Vladimir Vacic, Zoran Obradovic and Vladimir N Uversky

    BMC Genomics 2008 9(Suppl 2):S1

    Published on: 16 September 2008

  3. Research

    The FEATURE framework for protein function annotation: modeling new functions, improving performance, and extending to novel applications

    Structural genomics efforts contribute new protein structures that often lack significant sequence and fold similarity to known proteins. Traditional sequence and structure-based methods may not be sufficient ...

    Inbal Halperin, Dariya S Glazer, Shirley Wu and Russ B Altman

    BMC Genomics 2008 9(Suppl 2):S2

    Published on: 16 September 2008

  4. Research

    In silico comparison of transcript abundances during Arabidopsis thaliana and Glycine max resistance to Fusarium virguliforme

    Sudden death syndrome (SDS) of soybean (Glycine max L. Merr.) is an economically important disease, caused by the semi-biotrophic fungus Fusarium solani f. sp. glycines, recently renamed Fusarium virguliforme (Fv...

    Jiazheng Yuan, Mengxia Zhu, David A Lightfoot, M Javed Iqbal, Jack Y Yang and Khalid Meksem

    BMC Genomics 2008 9(Suppl 2):S6

    Published on: 16 September 2008

  5. Research

    Predicting protein disorder by analyzing amino acid sequence

    Many protein regions and some entire proteins have no definite tertiary structure, presenting instead as dynamic, disorder ensembles under different physiochemical circumstances. These proteins and regions are...

    Jack Y Yang and Mary Qu Yang

    BMC Genomics 2008 9(Suppl 2):S8

    Published on: 16 September 2008

  6. Research

    Batch Blast Extractor: an automated blastx parser application

    BLAST programs are very efficient in finding similarities for sequences. However for large datasets such as ESTs, manual extraction of the information from the batch BLAST output is needed. This can be time co...

    Mehdi Pirooznia, Edward J Perkins and Youping Deng

    BMC Genomics 2008 9(Suppl 2):S10

    Published on: 16 September 2008

  7. Research

    ILOOP – a web application for two-channel microarray interwoven loop design

    Microarray technology is widely applied to address complex scientific questions. However, there remain fundamental issues on how to design experiments to ensure that the resulting data enables robust statistic...

    Mehdi Pirooznia, Ping Gong, Jack Y Yang, Mary Qu Yang, Edward J Perkins and Youping Deng

    BMC Genomics 2008 9(Suppl 2):S11

    Published on: 16 September 2008

  8. Research

    Phylogenetic reconstruction from transpositions

    Because of the advent of high-throughput sequencing and the consequent reduction in the cost of sequencing, many organisms have been completely sequenced and most of their genes identified. It thus has become ...

    Feng Yue, Meng Zhang and Jijun Tang

    BMC Genomics 2008 9(Suppl 2):S15

    Published on: 16 September 2008

  9. Research

    Use artificial neural network to align biological ontologies

    Being formal, declarative knowledge representation models, ontologies help to address the problem of imprecise terminologies in biological and biomedical research. However, ontologies constructed under the aus...

    Jingshan Huang, Jiangbo Dang, Michael N Huhns and W Jim Zheng

    BMC Genomics 2008 9(Suppl 2):S16

    Published on: 16 September 2008

  10. Research

    A stable iterative method for refining discriminative gene clusters

    Microarray technology is often used to identify the genes that are differentially expressed between two biological conditions. On the other hand, since microarray datasets contain a small number of samples and...

    Min Xu, Mengxia Zhu and Louxin Zhang

    BMC Genomics 2008 9(Suppl 2):S18

    Published on: 16 September 2008

  11. Research

    Inferring gene regulatory networks by thermodynamic modeling

    To date, the reconstruction of gene regulatory networks from gene expression data has primarily relied on the correlation between the expression of transcription regulators and that of target genes.

    Chieh-Chun Chen and Sheng Zhong

    BMC Genomics 2008 9(Suppl 2):S19

    Published on: 16 September 2008

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Portable peer review

 The editors of BMC Genomics support initiatives that expedite the peer review process and are happy to consider manuscripts that have been reviewed in Axios Review or Peerage of Science. Please indicate in your cover letter if this applies to your manuscript.

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