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  1. Arbuscular mycorrhizal fungi (AMF) form mutualistic partnerships with approximately 80% of plant species. AMF, and their diversity, play a fundamental role in plant growth, driving plant diversity, and global ...

    Authors: Soon-Jae Lee, Eric Risse, Ivan D. Mateus and Ian R. Sanders
    Citation: BMC Genomics 2024 25:888
    Content type: Research Published on:

  2. Camellia oleifera is an important woody oil tree in China, in which the flowers and fruits appear during the same period. The endogenous hormone changes and transcription expression levels in different parts of t...

    Authors: Yayan Zhu, Da Huo, Minggang Zhang, Gang Wang, Feng Xiao, Jiajuan Xu, Fang Li, Qinmeng Zeng, Yingying Wei and Jie Xu
    Citation: BMC Genomics 2024 25:887
    Content type: Research Published on:

  3. Mycoplasma spp. are wall-less bacteria with small genomes (usually 0.5–1.5 Mb). Many Mycoplasma (M.) species are known to colonize the respiratory tract of both humans and livestock animals, where they act as pri...

    Authors: Matthieu Martineau, Chloé Ambroset, Stéphanie Lefebvre, Éléna Kokabi, Albertine Léon and Florence Tardy
    Citation: BMC Genomics 2024 25:886
    Content type: Research Published on:

  4. MicroRNAs (miRNAs) have been demonstrated to be closely related to human diseases. Studying the potential associations between miRNAs and diseases contributes to our understanding of disease pathogenic mechani...

    Authors: Dong Ouyang, Rui Miao, Juan Zeng, Xing Li, Ning Ai, Panke Wang, Jie Hou and Jinqiu Zheng
    Citation: BMC Genomics 2024 25:885
    Content type: Research Published on:

  5. Kefir is a complex microbial community that plays a critical role in the fermentation and production of bioactive peptides, and has health-improving properties. The composition of kefir can vary by geographic ...

    Authors: Matheus H. Silva, Letícia L. Batista, Serena M. Malta, Ana C. C. Santos, Ana P. Mendes-Silva, Ana M. Bonetti, Carlos Ueira-Vieira and Anderson R. dos Santos
    Citation: BMC Genomics 2024 25:884
    Content type: Research Published on:

  6. Tiarella polyphylla D. Don has been traditionally used to cure asthma and skin eruptions. However, the sequence and the structure of the mitogenome of T. polyphylla remained elusive, limiting the genomic and evol...

    Authors: Bo Liu, Qian Long, Weiwei LV, Yu Shi, Pan Li and Luxian Liu
    Citation: BMC Genomics 2024 25:883
    Content type: Research Published on:

  7. MicroRNA (miRNA) is a type of endogenous non-coding small RNA, which is abundant in living organisms. miRNAs play an important role in regulating gene expression and myriad cellular processes by binding to tar...

    Authors: Li Shaojin, Jia Jingying, Liu Baobao, Li Yahui, Duan Hongjuan, Yun Ma and Cai Xiaoyan
    Citation: BMC Genomics 2024 25:882
    Content type: Research Published on:

  9. Reproductive performance plays an important role in animal welfare, health and profitability in animal husbandry and breeding. It is well established that there is a negative correlation between performance an...

    Authors: Leopold Schwarz, Ana-Marija Križanac, Helen Schneider, Clemens Falker-Gieske, Johannes Heise, Zengting Liu, Jörn Bennewitz, Georg Thaller and Jens Tetens
    Citation: BMC Genomics 2024 25:880
    Content type: Research Published on:

  10. The correlation between heading date and flowering time significantly regulates grain filling and seed formation in barley and other crops, ultimately determining crop productivity. In this study, the transcri...

    Authors: Zhuo Ga, Liyun Gao, Xiruo Quzong, Wang Mu, Pubu Zhuoma, Xiongnu Taba, Guocheng Jiao, Dawa Dondup, Lhundrup Namgyal and Zha Sang
    Citation: BMC Genomics 2024 25:879
    Content type: Research Published on:

  11. As precision medicine advances, polygenic scores (PGS) have become increasingly important for clinical risk assessment. Many methods have been developed to create polygenic models with increased accuracy for r...

    Authors: Jonathan P. Tyrer, Pei-Chen Peng, Amber A. DeVries, Simon A. Gayther, Michelle R. Jones and Paul D. Pharoah
    Citation: BMC Genomics 2024 25:878
    Content type: Research Published on:

  12. Madhuca longifolia, the energy-producing and medicinal tropical tree originally from southern India, faces difficulties in adapting to the low temperatures of late autumn and early winter in subtropical southern ...

    Authors: Shuyu Wang, Haoyou Lin, Shuiyun Ye, Zhengli Jiao, Zhipeng Chen, Yifei Ma and Lu Zhang
    Citation: BMC Genomics 2024 25:877
    Content type: Research Published on:

  13. Begomoviruses are major constraint in the production of many crops. Upon infection, begomoviruses may substantially modulate plant biological processes. While how monopartite begomoviruses interact with their ...

    Authors: Wen-Ze He, Li Zhao, Kai Sun, Zhen Feng, Gen Zhou and Qiong Rao
    Citation: BMC Genomics 2024 25:876
    Content type: Research Published on:

  14. The widely adopted bulk RNA-seq measures the gene expression average of cells, masking cell type heterogeneity, which confounds downstream analyses. Therefore, identifying the cellular composition and cell typ...

    Authors: Chenqi Wang, Yifan Lin, Shuchao Li and Jinting Guan
    Citation: BMC Genomics 2024 25:875
    Content type: Software Published on:

  15. Goat milk is gaining popularity as a superior alternative to bovine milk due to its closer resemblance to human milk. Understanding the molecular processes underlying lactation is crucial for improving milk qu...

    Authors: Mahesh Shivanand Dige, Ankita Gurao, Lalit Pratap Singh, Meenakshi Chitkara, Manoj Kumar Singh, Gopal Dass, Arun Kumar Verma, Rakesh Kumar Pundir and Ranjit Singh Kataria
    Citation: BMC Genomics 2024 25:874
    Content type: Research Published on:

  16. This study aimed to design and develop a 5K low-density liquid chip for Hainan cattle utilizing targeted capture sequencing technology. The chip incorporates a substantial number of functional single nucleotid...

    Authors: Huan Wang, Hui Wu, Wencan Zhang, Junming Jiang, Hejie Qian, Churiga Man, Hongyan Gao, Qiaoling Chen, Li Du, Si Chen and Fengyang Wang
    Citation: BMC Genomics 2024 25:873
    Content type: Research Published on:

  17. Carotenoid cleavage oxygenases (CCOs) are a group of enzymes that catalyze the oxidative cleavage of carotenoid molecules. These enzymes widely exist in plants, fungi, and certain bacteria, and are involved in...

    Authors: Jiajie Yu, Yiran Wang, Heming Bai, Xiang Zhang and Ruiqi Wang
    Citation: BMC Genomics 2024 25:872
    Content type: Research Published on:

  18. The family Batrachoididae are a group of ecologically important teleost fishes with unique life histories, behavior, and physiology that has made them popular model organisms. Batrachoididae remain understudie...

    Authors: Nicholas S. Kron, Benjamin D. Young, Melissa K. Drown and M. Danielle McDonald
    Citation: BMC Genomics 2024 25:871
    Content type: Research Published on:

  19. Aging is a complex, heterogeneous process that has multiple causes. Knowledge on genomic, epigenomic and transcriptomic changes during the aging process shed light on understanding the aging mechanism. A recen...

    Authors: Xiaotian Wu, Yee Voan Teo, Nicola Neretti and Zhijin Wu
    Citation: BMC Genomics 2024 23(Suppl 4):866
    Content type: Research Published on:

    This article is part of a Supplement: Volume 23 Supplement 4

  21. Cell type prediction is crucial to cell type identification of genomics, cancer diagnosis and drug development, and it can solve the time-consuming and difficult problem of cell classification in biological ex...

    Authors: Bing Zhou, Quanzhong Liu, Meili Wang and Hao Wu
    Citation: BMC Genomics 2024 22(Suppl 5):922
    Content type: Research Published on:

    This article is part of a Supplement: Volume 22 Supplement 5

  24. Myelocytomatosis (MYC) transcription factors are crucial mediators of the response of plants to environmental stresses through via binding to DNA regulatory regions. However, few systematic characterizations of M...

    Authors: Tao Liu, Yani Zheng, Jingyu Yang, Rourou Li, Huan Chang, Nanyang Li, Wang Suna, Liping Wang and Xing Wang
    Citation: BMC Genomics 2024 25:867
    Content type: Research Published on:

  26. Pine wilt disease (PWD) is a devastating disease of pine trees caused by the pine wood nematode (Bursapherenchus xylophilus, PWN). To study how Pinus tabulaeformis responds to PWD infection, we collected 3-year-o...

    Authors: Baoyue Xing, Shuo Li, Jinyu Qi, Liyuan Yang, Dachuan Yin and Shouhui Sun
    Citation: BMC Genomics 2024 25:865
    Content type: Research Published on:

  27. Greater yam is a key staple crop grown in tropical and subtropical regions, while its asexual propagation mode had led to non-flowering mutations. How transposable elements contribute to its genetic variations...

    Authors: Sajjad Ali Panhwar, Dandan Wang, Fanhui Lin, Ying Wang, Mengli Liu, Runan Chen, Yonglan Huang, Wenqiang Wu, Dongyi Huang, Yong Xiao and Wei Xia
    Citation: BMC Genomics 2024 25:864
    Content type: Research Published on:

  28. The Domain of unknown function 679 membrane protein (DMP) family, which is unique to plants, plays a crucial role in reproductive development, stress response and aging. A comprehensive study was conducted to ...

    Authors: Yuan Ma, Huan Liu, Jinglong Wang, Guiqin Zhao, Kuiju Niu, Xiangrui Zhou, Ran Zhang and Ruirui Yao
    Citation: BMC Genomics 2024 25:863
    Content type: Research Published on:

  29. The polar bear (Ursus maritimus) occupies a relatively narrow ecological niche, with many traits adapted for cold temperatures, movement across snow, ice and open water, and for consuming highly lipid-dense prey ...

    Authors: Yulin Sun, Eline D. Lorenzen and Michael V. Westbury
    Citation: BMC Genomics 2024 25:826
    Content type: Research Published on:

  30. The Bucephalidae is a large family of digenean trematodes but most previous analyses of its phylogenetic position have relied on a single mitochondrial gene or morphological features. Mitochondrial genomes (mi...

    Authors: Ye Hu, Tong Ye, Hong Zou, Gui-Tang Wang, Wen-Xiang Li and Dong Zhang
    Citation: BMC Genomics 2024 25:862
    Content type: Research Published on:

  31. Black spot disease in tree peony caused by the fungal necrotroph A. alternata, is a primary limiting factor in the production of the tree peony. The intricate molecular mechanisms underlying the tree peony resist...

    Authors: Huiyun Li, Yifan Lu, Zixin Liu, Qing Ren, Zhongyan Liu, Sibing Liu, Ruili Ren, Fei Wang, Yi Liu and Yanzhao Zhang
    Citation: BMC Genomics 2024 25:861
    Content type: Research Published on:

  32. Organellar transcriptomes are relatively under-studied systems, with data related to full-length transcripts and posttranscriptional modifications remaining sparse. Direct RNA sequencing presents the possibili...

    Authors: Jakub Piątkowski, Kacper Koźluk and Paweł Golik
    Citation: BMC Genomics 2024 25:860
    Content type: Research Published on:

  33. Milk is essential for mammalian nutrition because it provides vital nutrients for growth and development. Milk composition, which is influenced by genetic and environmental factors, supports lactation, a compl...

    Authors: Filippo Cendron, Umberto Rosani, Marco Franzoi, Carlo Boselli, Flavio Maggi, Massimo De Marchi and Mauro Penasa
    Citation: BMC Genomics 2024 25:859
    Content type: Research Published on:

  34. Melanin in the black-bone chicken’s body is considered the material basis for its medicinal effects and is an economically important trait. Therefore, improving the melanin content is a crucial focus in the br...

    Authors: Chuwen Chen, Jie Li, Zhiyi Li, Yi Nong, Jiayan Wang, Zi Wang and Zhixiong Li
    Citation: BMC Genomics 2024 25:858
    Content type: Research Published on:

  35. Asparagus L., widely distributed in the old world is a genus under Asparagaceae, Asparagales. The species of the genus were mainly used as vegetables, traditional medicines as well as ornamental plants. However, ...

    Authors: He Wu, Wenhua Dongchen, Yunbin Li, Sylvia E. Brown, Shugu Wei, Chun Lin, Zichao Mao and Zhengjie Liu
    Citation: BMC Genomics 2024 25:857
    Content type: Research Published on:

  36. The expansion of sequencing technologies as a result of the response to the COVID-19 pandemic enabled pathogen (meta)genomics to be deployed as a routine component of surveillance in many countries. Scaling ge...

    Authors: Pedro Milet Meirelles, Pablo Alessandro B Viana, Diogo Antonio Tschoeke, Laise de Moraes, Luciane Amorim Santos, Manoel Barral-Netto, Ricardo Khouri and Pablo Ivan P Ramos
    Citation: BMC Genomics 2024 25:856
    Content type: Research Published on:

  38. Endemic plants are key to understanding the evolutionary history and enhancing biodiversity within their unique regions, while also offering significant economic potential. The East Asian endemic genus Corchorops...

    Authors: Joonhyung Jung, Tao Deng, Yu Gyeom Kim, Changkyun Kim, Hang Sun and Joo-Hwan Kim
    Citation: BMC Genomics 2024 25:854
    Content type: Research Published on:

  39. Terniopsis yongtaiensis, a member of the Podostemaceae family, is an aquatic flowering plant displaying remarkable adaptive traits that enable survival in submerged, turbulent habitats. Despite the progressive ex...

    Authors: Miao Zhang, Xiaohui Zhang, Yinglin Huang, Zhangxue Chen and Binghua Chen
    Citation: BMC Genomics 2024 25:853
    Content type: Research Published on:

  40. Low levels of the essential amino acid lysine in maize endosperm is considered to be a major problem regarding the nutritional quality of food and feed. Increasing the lysine content of maize is important to i...

    Authors: Xiaolei Zhang, Hongtao Wen, Jing Wang, Lin Zhao, Lei Chen, Jialei Li, Haitao Guan, Zhenhai Cui and Baohai Liu
    Citation: BMC Genomics 2024 25:852
    Content type: Research Published on:

  41. The WD40 domain, one of the most abundant in eukaryotic genomes, is widely involved in plant growth and development, secondary metabolic biosynthesis, and mediating responses to biotic and abiotic stresses. WD...

    Authors: Peng Tang, Jingcai Huang, Jin Wang, Meiqi Wang, Qing Huang, Luzhao Pan and Feng Liu
    Citation: BMC Genomics 2024 25:851
    Content type: Research Published on:

  42. Adipose tissue affects not only the meat quality of domestic animals, but also human health. Adipocyte differentiation is regulated by a series of regulatory genes and cyclins. Four and half-LIM protein (FHL2)...

    Authors: An Li, Youli Wang, Yong Wang, Yan Xiong, Yanyan Li, Wei Liu, Jiangjiang Zhu and Yaqiu Lin
    Citation: BMC Genomics 2024 25:850
    Content type: Research Published on:

  43. Research into the genetic diversity of honey bee (Apis mellifera L.) populations has become increasingly significant in recent decades, primarily due to population declines attributed to human activities and clim...

    Authors: Boris Lukic, Nikola Raguz, Marin Kovačić, Ino Curik, Jana Obšteter, Janez Prešern, Jernej Bubnič, Ras Lužaić, Ivan Pihler, Goran Mirjanić, Marco Pietropaoli and Zlatko Puškadija
    Citation: BMC Genomics 2024 25:849
    Content type: Research Published on:

  44. Temperature is a crucial environmental determinant for the vitality and development of teleost fish, yet the underlying mechanisms by which they sense temperature fluctuations remain largely unexplored. Transi...

    Authors: Chuanrui Li, Xiaowei Qin, Mincong Liang, Zhiyong Luo, Zhipeng Zhan, Shaoping Weng, Changjun Guo and Jianguo He
    Citation: BMC Genomics 2024 25:848
    Content type: Research Published on:

  45. The hard clam (Mercenaria mercenaria), a marine bivalve distributed along the U.S. eastern seaboard, supports a significant shellfish industry. Overharvest in the 1970s and 1980s led to a reduction in landings. W...

    Authors: Denis Grouzdev, Sarah Farhat, Ximing Guo, Emmanuelle Pales Espinosa, Kimberly Reece, Jan McDowell, Huiping Yang, Gregg Rivara, Joshua Reitsma, Antoinette Clemetson, Arnaud Tanguy and Bassem Allam
    Citation: BMC Genomics 2024 25:847
    Content type: Research Published on:

  46. Squamosa promoter-binding protein-like (SPL) is a plant-specific transcription factor that is widely involved in the regulation of plant growth and development, including flower and grain development, stress r...

    Authors: Ailing He, Hui Zhou, Chao Ma, Qing Bai, Haizhu Yang, Xin Yao, Weijiao Wu, Guoxing Xue and Jingjun Ruan
    Citation: BMC Genomics 2024 25:846
    Content type: Research Published on:

  47. Lanping black-boned sheep (LPB) represent a distinctive mammalian species characterized by hyperpigmentation, resulting in black bone and muscle features, in contrast to their conventional counterparts exhibit...

    Authors: Yuqing Chong, Heli Xiong, Zhendong Gao, Ying Lu, Jieyun Hong, Jiao Wu, Xiaoming He, Dongmei Xi, Xiaolong Tu and Weidong Deng
    Citation: BMC Genomics 2024 25:845
    Content type: Research Published on:

  48. Oculocutaneous albinism type1 (OCA1) is caused by the TYR gene's homozygous and compound heterozygous variants. TKFC gene variants cause triokinase & FMN cyclase deficiency syndrome with variable multisystemic di...

    Authors: Engy A. Ashaat, Nora N. Esmaiel, Sonia A. El-Saiedi, Neveen A. Ashaat, Dalia Farouk Hussen, Abeer Ramadan, Mohamed Ahmed Al Kersh, Nirvana S. AbdelHakim, Ibrahim Said, Ammal M. Metwally and Alaaeldin Fayez
    Citation: BMC Genomics 2024 25:844
    Content type: Research Published on:

  49. Helicobacter pylori infects the stomach and/or small intestines in more than half of the human population. Infection with H. pylori is the most common cause of chronic gastritis, which can lead to more severe gas...

    Authors: Adalucy Alvarez-Aldana, Odion O. Ikhimiukor, Yina Marcela Guaca-González, Manuela Montoya-Giraldo, Stephanie S. R. Souza, Ana Beatriz Garcez Buiatte and Cheryl P. Andam
    Citation: BMC Genomics 2024 25:843
    Content type: Research Published on:

  50. DNA metabarcoding applies high-throughput sequencing approaches to generate numerous DNA barcodes from mixed sample pools for mass species identification and community characterisation. To date, however, most ...

    Authors: Jia Jin Marc Chang, Yin Cheong Aden Ip, Wan Lin Neo, Maxine A. D. Mowe, Zeehan Jaafar and Danwei Huang
    Citation: BMC Genomics 2024 25:842
    Content type: Research Published on:

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BMC Genomics

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