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  1. Research article

    Membrane-enriched proteome changes and prion protein expression during neural differentiation and in neuroblastoma cells

    The function of the prion protein, involved in the so-called prion diseases, remains a subject of intense debate and the possibility that it works as a pleiotropic protein through the interaction with multiple...

    J. A. Macedo, D. Schrama, I. Duarte, E. Tavares, J. Renaut, M. E. Futschik, P. M. Rodrigues and E. P. Melo

    BMC Genomics 2017 18:319

    Published on: 22 April 2017

  2. Research article

    A reference floral transcriptome of sexual and apomictic Paspalum notatum

    Paspalum notatum Flügge is a subtropical grass native to South America, which includes sexual diploid and apomictic polyploid biotypes. In the past decade, a number of apomixis-associa...

    Juan Pablo A. Ortiz, Santiago Revale, Lorena A. Siena, Maricel Podio, Luciana Delgado, Juliana Stein, Olivier Leblanc and Silvina C. Pessino

    BMC Genomics 2017 18:318

    Published on: 21 April 2017

  3. Research article

    Comparative transcriptomics of mountain pine beetle pheromone-biosynthetic tissues and functional analysis of CYP6DE3

    The mountain pine beetle (MPB, Dendroctonus ponderosae Hopkins) is a highly destructive pest of pine forests in western North America. During flight to a new host tree and initiation of feeding, mountain pine bee...

    J. A. Nadeau, J. Petereit, R. L. Tillett, K. Jung, M. Fotoohi, M. MacLean, S. Young, K. Schlauch, G. J. Blomquist and C. Tittiger

    BMC Genomics 2017 18:311

    Published on: 20 April 2017

  4. Research Article

    Genome-wide identification of genes probably relevant to the adaptation of schizothoracins (Teleostei: Cypriniformes) to the uplift of the Qinghai-Tibet Plateau

    Molecular adaptation to the severe environments present during the uplift of the Qinghai-Tibet Plateau has attracted the attention of researchers. The divergence of the three specialization groups of schizotho...

    Wei Chi, Xufa Ma, Jiangong Niu and Ming Zou

    BMC Genomics 2017 18:310

    Published on: 20 April 2017

  5. Research article

    Global analysis of protein lysine succinylation profiles in common wheat

    Protein lysine succinylation is an important post-translational modification and plays a critical regulatory role in almost every aspects of cell metabolism in both eukaryotes and prokaryotes. Common wheat is ...

    Yumei Zhang, Guangyuan Wang, Limin Song, Ping Mu, Shu Wang, Wenxing Liang and Qi Lin

    BMC Genomics 2017 18:309

    Published on: 20 April 2017

  6. Research Article

    Selective sweep with significant positive selection serves as the driving force for the differentiation of japonica and indica rice cultivars

    Asian cultivated rice (Oryza sativa L.), including japonica and indica, is unarguable the most important crop in Asia as well as worldwide. However, a decisive conclusion of its origination and domestication proc...

    Yang Yuan, Qijun Zhang, Shuiyun Zeng, Longjiang Gu, Weina Si, Xiaohui Zhang, Dacheng Tian, Sihai Yang and Long Wang

    BMC Genomics 2017 18:307

    Published on: 19 April 2017

  7. Research article

    Genetics and mapping of a new anthracnose resistance locus in Andean common bean Paloma

    The Andean cultivar Paloma is resistant to Mesoamerican and Andean races of Colletotrichum lindemuthianum, the fungal pathogen that causes the destructive anthracnose disease in common bean. Remarkably, Paloma is...

    Sandra Aparecida de Lima Castro, Maria Celeste Gonçalves-Vidigal, Thiago Alexandre Santana Gilio, Giselly Figueiredo Lacanallo, Giseli Valentini, Vanusa da Silva Ramos Martins, Qijian Song, Marta Zulema Galván, Oscar P. Hurtado-Gonzales and Marcial Antonio Pastor-Corrales

    BMC Genomics 2017 18:306

    Published on: 18 April 2017

  8. Research article

    Reduced changes in protein compared to mRNA levels across non-proliferating tissues

    The quantitative relations between RNA and protein are fundamental to biology and are still not fully understood. Across taxa, it was demonstrated that the protein-to-mRNA ratio in steady state varies in a dir...

    Kobi Perl, Kathy Ushakov, Yair Pozniak, Ofer Yizhar-Barnea, Yoni Bhonker, Shaked Shivatzki, Tamar Geiger, Karen B. Avraham and Ron Shamir

    BMC Genomics 2017 18:305

    Published on: 18 April 2017

  9. Research article

    Drosophila melanogaster retrotransposon and inverted repeat-derived endogenous siRNAs are differentially processed in distinct cellular locations

    Endogenous small interfering (esi)RNAs repress mRNA levels and retrotransposon mobility in Drosophila somatic cells by poorly understood mechanisms. 21 nucleotide esiRNAs are primarily generated from retrotran...

    Andrew W. Harrington, Michael R. McKain, Daniel Michalski, Kaylyn M. Bauer, Joshua M. Daugherty and Mindy Steiniger

    BMC Genomics 2017 18:304

    Published on: 17 April 2017

  10. Research Article

    Large-scale analysis of post-translational modifications in E. coli under glucose-limiting conditions

    Post-translational modification (PTM) of proteins is central to many cellular processes across all domains of life, but despite decades of study and a wealth of genomic and proteomic data the biological functi...

    Colin W. Brown, Viswanadham Sridhara, Daniel R. Boutz, Maria D. Person, Edward M. Marcotte, Jeffrey E. Barrick and Claus O. Wilke

    BMC Genomics 2017 18:301

    Published on: 17 April 2017

  11. Research article

    Genomic characterization of two novel pathogenic avipoxviruses isolated from pacific shearwaters (Ardenna spp.)

    Over the past 20 years, many marine seabird populations have been gradually declining and the factors driving this ongoing deterioration are not always well understood. Avipoxvirus infections have been found i...

    Subir Sarker, Shubhagata Das, Jennifer L. Lavers, Ian Hutton, Karla Helbig, Jacob Imbery, Chris Upton and Shane R. Raidal

    BMC Genomics 2017 18:298

    Published on: 13 April 2017

  12. Research article

    Single-base resolution methylomes of upland cotton (Gossypium hirsutum L.) reveal epigenome modifications in response to drought stress

    DNA methylation, with a cryptic role in genome stability, gene transcription and expression, is involved in the drought response process in plants, but the complex regulatory mechanism is still largely unknown.

    Xuke Lu, Xiaoge Wang, Xiugui Chen, Na Shu, Junjuan Wang, Delong Wang, Shuai Wang, Weili Fan, Lixue Guo, Xiaoning Guo and Wuwei Ye

    BMC Genomics 2017 18:297

    Published on: 13 April 2017

  13. Research article

    Utilization of defined microbial communities enables effective evaluation of meta-genomic assemblies

    Metagenomics is the study of the microbial genomes isolated from communities found on our bodies or in our environment. By correctly determining the relation between human health and the human associated micro...

    William W. Greenwald, Niels Klitgord, Victor Seguritan, Shibu Yooseph, J. Craig Venter, Chad Garner, Karen E. Nelson and Weizhong Li

    BMC Genomics 2017 18:296

    Published on: 13 April 2017

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