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Table 1 Samples of the microarray compendium

From: A gene expression signature shared by human mature oocytes and embryonic stem cells

Cell type Tissue or cell line Normal or Malignant Number of samples References
Normal cell compendium (n = 205)
Human embryonic stem cells Cell line Normal 29 [3843]
Mature oocytes Cells Normal 9 [18, 44, 45] and this study
Foreskin fibroblasts Cell line Normal 4 [40]
Ovary Tissue Normal 3 [46, 47]
Central nervous system Tissue Normal 44 [46, 47]
Peripheral nervous system Tissue Normal 18 [46, 47]
Skin and keratinocytes Tissue and cultured primary cells Normal 6 [39]
Lung Tissue Normal 11 [46, 47]
Digestive tract Tissue Normal 19 [46, 47]
Thyroid Tissue Normal 5 [46, 47]
Adipocytes Tissue Normal 2 [46, 47]
Kidney and prostate Tissue Normal 6 [46, 47]
Heart and muscle Tissue Normal 10 [46, 47]
Hematopoietic tissues Tissue and purified cells Normal 30 [39, 46, 47]
Uterus Tissue Normal 6 [46, 47]
Placenta Tissue Normal 3 [46, 47]
Highly cycling cells compendium (n = 22)
Leukemia cell lines Cell line Malignant 8 [47]
Lymphoma cell lines Cell line Malignant 4 [47]
Early erythroid cells Cultured primary cells Normal 2 [47]
Endothelial cells Cultured primary cells Normal 2 [47]
Hepatocarcinoma cell line Cell line Malignant 2 This study
Colorectal cancer cell line Cell line Malignant 2 [47]
Breast cancer cell line Cell line Malignant 2 This study
  1. A summary of the microarray samples used in this study (A full list of samples is found in Additional file 1)