The complete mitochondrial genome of the house dust mite Dermatophagoides pteronyssinus (Trouessart): a novel gene arrangement among arthropods

Dermauw, Wannes; Van Leeuwen, Thomas; Vanholme, Bartel; Tirry, Luc

doi:10.1186/1471-2164-10-107

Table 1 Nucleotides composition of completely sequenced mt genomes of Acari and *Limulus polyphemus**.

From: The complete mitochondrial genome of the house dust mite Dermatophagoides pteronyssinus (Trouessart): a novel gene arrangement among arthropods

Organism^a	S^b	Genbank acc. nr	Complete mt genome				mt PCG^c		12S-rRNA		16S-rRNA		Control Region(s)^d		Ref. ^e
			Length (bp)	AT%	AT-skew^f	GC-skew^f	Length (bp)	AT%	Lengh (bp)	AT%	Length (bp)	AT%	Length (bp)	AT%
D. pteronyssinus	A	EU884425	14,203	72.60	-0.199	0.194	10,826	71.61	665	72.93	1078	76.07	286	91.61	this study
Am. triguttatum	P	NC_005963	14,740	78.40	-0.022	-0.133	10,876	78.29	693	79.65	1199	81.82	307-307	71.66-71.01	unpub.
As. sp.^g	A	NC_010596	16,067	70.07	0.015	-0.049	10,560	69.27	680	72.79	1047	76.31	1207-1236	70.01–70.06	unpub.
C. capensis	P	NC_005291	14,418	73.54	0.036	-0.374	10,873	72.66	695	76.26	1225	78.29	342	71.35	[38]
H. flava	P	NC_005292	14,686	76.91	-0.018	-0.116	10,817	76.65	699	78.40	1196	81.61	310-310	66.45–66.77	[38]
I. hexagonus	P	NC_002010	14,539	72.66	0.033	-0.366	10,826	71.13	705	78.44	1287	72.60	359	71.87	[37]
I. holocyclus	P	NC_005293	15,007	77.38	-0.013	-0.254	10,860	76.38	716	77.93	1214	81.55	352–450	78.41–80.00	[26]
I. persulcatus	P	NC_004370	14,539	77.34	-0.024	-0.269	10,879	76.59	720	78.89	1206	79.77	352	77.56	[26]
I. uriae	P	NC_006078	15,053	74.79	0.007	-0.328	10,837	73.75	712	78.09	1210	78.35	388–476	77.06-74.16	[26]
Le. akamushi	A	NC_007601	13,698	67.47	-0.016	-0.075	10,292	67.19	596	67.11	1026	72.03	260–262	60.38-59.54	[74]
Le. deliense	A	NC_007600	13,731	69.95	-0.017	-0.058	10,292	70.06	602	70.27	1023	73.02	294–301	62.24-61.79	[74]
Le. pallidum ^h	A	NC_007177	16,779	70.96	-0.031	-0.044	10,312	71.38	601	72.05	1008	74.90	537-724-736-803	63.87-66.71-66.75-66.50	[24]
M. occidentalis ⁱ	P	NC_009093	24,961	75.97	0.095	-0.291	10,014	74.38	742	81.13	1192	84.31	310-311-311-311	79.35-79.10-79.42-78.78	[23]
O. moubata	P	NC_004357	14,398	72.26	0.067	-0.379	10,890	71.35	686	74.20	1212	76.90	342	71.64	[38]
O. porcinus	P	NC_005820	14,378	70.98	0.059	-0.355	10,877	70.11	691	74.38	1207	74.48	338	69.53	[27]
R. sanguineus	P	NC_002074	14,710	77.96	-0.034	-0.098	10,803	77.96	687	79.18	1190	81.34	303–305	67.33-66.56	[37]
S. magnus	A	NC_011574	13,818	74.59	-0.020	-0.037	10,560	74.44	609	74.38	992	74.38	1018	75.66	[22]
T. urticae	A	NC_010526	13,103	84.27	0.026	-0.016	10,226	84.00	646	85.91	991	85.27	44	95.45	[18]
U. foilii ^g	A	NC_011036	14,738	72.95	0.201	-0.279	10,679	71.83	649	74.35	1016	74.35	387–644	76.49–77.33	unpub.
V. destructor	P	NC_004454	16,477	80.02	-0.021	0.177	10,728	79.22	726	80.44	1149	83.12	2174	79.71	[25]
W. hayashii ^g	A	NC_010595	14,857	72.97	0.264	-0.305	10,573	73.01	625	75.05	1045	77.42	1403	68.28	unpub.
Li. polyphemus	^j	NC_003057	14,985	67.60	0.111	-0.399	11,077	66.43	799	69.70	1296	71.00	348	81.3	[30, 31]

* values were obtained from the corresponding GenBank flat-file in the NCBI database (status January 10, 2009)
^a D = Dermatophagoides, Am = Amblyomma, As = Ascoschoengastia, C = Carios, H = Haemaphysalis, I = Ixodes, Le = Leptotrombidium, M = Metaseiulus, O = Ornithodoros, R = Rhipicephalus, S = Steganacarus, T = Tetranychus, U = Unionicola, V = Varroa, W = Walchia, Li = Limulus
^b S = Acari superorder (A = Acariformes, P = Parasitiformes)
^c PCG = Protein coding genes
^d duplications of the control region were also considered
^e Ref = References; unpub = unpublished
^f GC- and AT-skew for the strand coding for cox1, calculated following [46]
^g for these species the largest non-coding region(s) was/were assumed to be the control region(s)
^h L. pallidum has a duplication of 16S-rRNA; in this table the largest 16S-rRNA gene is considered
ⁱ only single copy genes were considered for protein coding gene length calculation of M. occidentalis
^jL. polyphemus belongs to the order of the Xiphosura within the class of the Merostomata

Back to article page

ISSN: 1471-2164

Contact us

Submission enquiries: bmcgenomics@biomedcentral.com
General enquiries: ORSupport@springernature.com

BMC Genomics

Contact us