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Table 3 Relative synonymous codon usage (RSCU) and number of codons per 1000 codons (NC1000) in the protein coding genes of the mitochondrial genome of D. pteronyssinus.

From: The complete mitochondrial genome of the house dust mite Dermatophagoides pteronyssinus (Trouessart): a novel gene arrangement among arthropods

Amino acid codon RSCU* NC1000 Amino acid codon RSCU NC1000 Amino acid codon RSCU NC1000 Amino acid codon RSCU NC1000
F TTC 0.24 14.14 S2 TCA 1.13 15.52 Y TAC 0.48 11.09 C TGC 0.33 2.77
  TTT 1.76 105.60   TCC 0.43 5.82   TAT 1.52 35.20   TGT 1.67 14.14
L2 TTA 3.43 78.71   TCG 0.14 1.94      W TGA 1.11 12.75
  TTG 0.81 18.57   TCT 3.81 52.11       TGG 0.89 10.25
L1 CTA 0.74 16.91 P CCA 1.53 14.41 H CAC 0.50 4.16 R CGA 1.37 3.88
  CTC 0.10 2.22   CCC 0.35 3.33   CAT 1.50 12.47   CGC 0.00 0.00
  CTG 0.10 2.22   CCG 0.24 2.22 Q CAA 1.68 8.59   CGG 0.49 1.39
  CTT 0.83 19.12   CCT 1.88 17.74   CAG 0.32 1.66   CGT 2.15 6.10
I ATC 0.40 16.08 T ACA 1.33 13.58 N AAC 0.63 10.53 S1 AGA 0.99 13.58
  ATT 1.60 64.30   ACC 0.44 4.43   AAT 1.37 23.00   AGC 0.16 2.22
M ATA 1.58 57.65   ACG 0.05 0.55 K AAA 1.67 28.55   AGG 0.61 8.31
  ATG 0.42 15.52   ACT 2.18 22.17   AAG 0.33 5.54   AGT 0.73 9.98
V GTA 1.09 21.06 A GCA 0.71 4.99 D GAC 0.69 6.93 G GGA 0.96 13.86
  GTC 0.17 3.33   GCC 0.59 4.16   GAT 1.31 13.03   GGC 0.15 2.22
  GTG 0.43 8.31   GCG 0.16 1.11 E GAA 0.95 10.81   GGG 1.45 21.06
  GTT 2.31 44.62   GCT 2.53 17.74   GAG 1.05 11.92   GGT 1.44 20.79
  1. * RSCU is the number of times a particular codon is observed relative to the number of times a codon would be observed in the absence of any codon usage bias [39].
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BMC Genomics

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