Skip to main content

Table 2 Differentially expressed genes in pi-L2.

From: Population-specific gene expression in the plant pathogenic nematode Heterodera glycines exists prior to infection and during the onset of a resistant or susceptible reaction in the roots of the Glycine max genotype Peking

R-pi-L2-INDUCED
Afx ID Array ID Best Hit ID E-value Best Hit Organism Best Hit Description FC P-Value q-Value(%)
HgAffx.22005.3.S1_at AF500033.1 AAP30772 1.00E-56 Heterodera glycines putative gland protein G23G12 117 0.00000611 0
HgAffx.22005.3.S1_x_at AF500033.1 AAP30772 1.00E-56 Heterodera glycines putative gland protein G23G12 69.3 0.000000293 0
HgAffx.12397.1.S1_at CB375585 AAL78214 8.00E-12 Heterodera glycines putative esophageal gland cell protein Hgg-20 9.21 0.00125 0
HgAffx.10464.1.S1_at CB378037 NP_001023126 4.00E-12 Caenorhabditis elegans Temporarily Assigned Gene name (tag-287) 7.52 0.00188 0
HgAffx.6167.1.S1_at CB826044 AAL78214 3.00E-14 Heterodera glycines putative esophageal gland cell protein Hgg-20 5.04 0.000766 0
HgAffx.13471.7.S1_at BF013637 AAO49799 7.00E-36 Heterodera glycines arginine kinase 4.71 0.000329 0
HgAffx.15037.1.S1_at CB375286 XP_001900724 4.00E-15 Brugia malayi BESS motif family protein 4.26 0.00792 1.562478529
HgAffx.23436.1.S1_at BF014413 AAP30770 2.00E-11 Heterodera glycines putative gland protein G17G01 3.86 0.00254 0
HgAffx.3818.1.A1_at CK348872 XP_001902079 2.00E-16 Brugia malayi Fucosyl transferase family protein 3.63 0.00575 1.562478529
HgAffx.22919.1.S1_at CB375623 XP_001670157 2.00E-15 Caenorhabditis briggsae AF16 Hypothetical protein CBG06224 3.48 0.0104 1.562478529
HgAffx.4275.2.S1_at AF500024.1 AAP30763 4.00E-170 Heterodera glycines putative gland protein G8H07 3.05 0.00348 0
HgAffx.9246.1.S1_at CB379256 XP_001899138 1.00E-72 Brugia malayi 3'-5' exonuclease family protein 3.03 0.0199 9.06375819
HgAffx.11497.1.S1_at CB934953 XP_001900969 3.00E-24 Brugia malayi DNA methyltransferase 1 associated protein 1 2.73 0.0189 9.06375819
HgAffx.15350.1.S1_at CB281644 XP_001196614 6.00E-53 Strongylocentrotus purpuratus Serine/threonine-protein kinase Eg2-like 2.51 0.0028 1.562478529
HgAffx.23782.1.S1_at BF014067 XP_001899293 5.00E-13 Brugia malayi hypothetical protein Bm1_39195 2.5 0.00606 9.06375819
HgAffx.2353.1.S1_at CK350675 YP_001958273 2.00E-13 Candidatus Amoebophilus asiaticus 5a2 hypothetical protein Aasi_1217 2.16 0.0014 1.562478529
HgAffx.1966.1.S1_at CK351813 AAO85518 1.00E-59 Oesophagostomum dentatum putative serine/threonine phosphatase 1.88 0.000209 0
HgAffx.12364.1.S1_at AF344864.1 AAL78213 5.00E-139 Heterodera glycines probable protein kinase Hgg-20 1.77 0.00444 9.06375819
HgAffx.6833.1.S1_at CB825378 XP_001901483 2.00E-36 Brugia malayi hypothetical protein Bm1_50075 1.69 0.00296 9.06375819
R-pi-L2-SUPPRESSED
Afx ID Array ID Best Hit ID E-value Best Hit Organism Best Hit Description FC P-Value q-value(%)
HgAffx.22522.2.A1_s_at CK351795 AAL78214 6.00E-30 Heterodera glycines putative esophageal gland cell protein Hgg-20 -14.5 0.000008 0
HgAffx.22522.2.A1_x_at CK351795 AAL78214 6.00E-30 Heterodera glycines putative esophageal gland cell protein Hgg-20 -13.9 0.0000174 0
HgAffx.22522.2.A1_at CK351795 AAL78214 6.00E-30 Heterodera glycines putative esophageal gland cell protein Hgg-20 -13.1 0.0000382 0
HgAffx.8428.1.S1_at CB825226 XP_001896306 7.00E-28 Brugia malayi PX domain containing protein -8.28 0.000124 0
HgAffx.2485.1.S1_at CK350205 XP_001677586 4.00E-23 Caenorhabditis briggsae AF16 Hypothetical protein CBG05236 -7.66 0.000329 0
HgAffx.22522.2.S1_at CK351795 AAL78214 6.00E-30 Heterodera glycines putative esophageal gland cell protein Hgg-20 -6.48 0.00364 0
HgAffx.22522.2.S1_x_at CK351795 AAL78214 6.00E-30 Heterodera glycines putative esophageal gland cell protein Hgg-20 -5.64 0.00533 0
HgAffx.20464.1.S1_at BI749289 NP_505424 7.00E-27 Caenorhabditis elegans E02C12.4 -4.68 0.000339 0
HgAffx.13898.1.S1_at CB378644 NP_495784 1.00E-32 Caenorhabditis elegans ZYGote defective (zyg-9) -3.67 0.00052 0
HgAffx.10090.1.S1_at CB378411 CAB88203 2.00E-28 Globodera pallida putative cuticular collagen -3.65 0.0128 5.390550924
HgAffx.12914.1.S1_at CB281819 XP_001665811 1.00E-54 Caenorhabditis briggsae AF16 hypothetical protein CBG18196 -3.65 0.000339 0
HgAffx.15942.1.S1_at CB280414 XP_001676377 5.00E-11 Caenorhabditis briggsae AF16 Hypothetical protein CBG14167 -2.74 0.0049 1.268364923
HgAffx.21565.2.S1_at BI748188 XP_001678481 2.00E-14 Caenorhabditis briggsae AF16 Hypothetical protein CBG13418 -2.52 0.00454 1.268364923
HgAffx.15681.1.S1_at CB281313 XP_001678446 1.00E-21 Caenorhabditis briggsae AF16 Hypothetical protein CBG13461 -2.19 0.00417 4.791600821
HgAffx.23342.1.S1_at BF014507 CAC83611 7.00E-61 Globodera rostochiensis EXPB1 protein -2.16 0.00882 9.06375819
  1. Probe set lists that are induced in pi-L2 NL1-RHg that ultimately undergo a resistant reaction. FC- NL1-RHg, fold change- NL1-RHg; PV- NL1-RHg, p-value-NL1-RHg. A > |1.5| fold cutoff and P ≤ 0.05 was used. FDR (set at 10%) parameters are: q-Value (%).