Population-specific gene expression in the plant pathogenic nematode Heterodera glycines exists prior to infection and during the onset of a resistant or susceptible reaction in the roots of the Glycine max genotype Peking

Table 3 Differentially expressed genes in i-L2 NL1-RHg at 12 h.

R-12 hour-INDUCED
Afx ID	Array ID	Best Hit ID	E-value	Best Hit Organism	Best Hit Description	FC	P-Value	q-value(%)
AFFX-r2-Hg-actin-3_x_at	AF318603.2	AAG47837	0	Heterodera glycines	actin 1	4.78	0.00513	0
HgAffx.15051.1.S1_at	CB279435	ABN64198	2.00E-22	Meloidogyne incognita	glutathione S-transferase-1	3.38	0.00692	0
AFFX-r2-Hg-actin-3_at	AF318603.2	AAG47837	0	Heterodera glycines	actin 1	3	0.00117	0
HgAffx.18740.1.S1_at	AF318603.2	AAG47837	0	Heterodera glycines	actin 1	2.8	0.00318	0
HgAffx.18740.1.S1_x_at	AF318603.2	AAG47837	0	Heterodera glycines	actin 1	2.59	0.00582	0
HgAffx.22081.1.S1_at	CK349167	NP_496721	4.00E-30	Caenorhabditis elegans	Carnitine Palmitoyl Transferase family member (cpt-1)	2.46	0.0018	0
R-12 hour-SUPPRESSED
Afx ID	Array ID	Best Hit ID	E-value	Best Hit Organism	Best Hit Description	FC	P-Value	q-value(%)

Probe set lists that are induced i-L2 NL1-RHg at 12 h that ultimately undergo a resistant reaction. FC-NL1-RHg; fold change- NL1-RHg; PV- NL1-RHg, p-value-NL1-RHg. A > |1.5| fold cutoff and P ≤ 0.05 was used. FDR (set at 10%) parameters are: Score (d), q-value (%).

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