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Table 5 Differentially expressed genes in i-L2 NL1-RHg at 8d.

From: Population-specific gene expression in the plant pathogenic nematode Heterodera glycines exists prior to infection and during the onset of a resistant or susceptible reaction in the roots of the Glycine max genotype Peking

R-8 DAY-INDUCED
Afx ID Array ID Best Hit ID E-value Best Hit Organism Best Hit Description FC P-value q-value(%)
HgAffx.2725.1.S1_at AF490251.1 AAO85459 1.00E-103 Heterodera glycines putative gland protein G20E03 12.7 0.000118 0
HgAffx.22770.1.S1_at AF469060.1 AAN32889 2.00E-45 Heterodera glycines ubiquitin extension protein 9.22 0.00353 1.523165321
HgAffx.20740.1.S1_at CD748921 NP_498657 1.00E-26 Caenorhabditis elegans R13A5.6 9.18 0.00964 6.920221232
HgAffx.20813.1.S1_at AF502393.1 AAP30836 3.00E-83 Heterodera glycines putative gland protein G30C02; Hg-G30C02 8.73 0.0000945 0
HgAffx.20336.1.S1_at AF044210.1 AAC33848 2.00E-172 Heterodera glycines beta-1,4-endoglucanase-3 precursor 8.55 0.00254 1.068579553
HgAffx.20336.2.S1_s_at AY043224.1 AAK85303 0 Heterodera glycines beta-1,4-endoglucanase-4 6.66 0.00374 1.912614015
HgAffx.22005.1.S1_s_at AF502392.1 AAP30835 1.00E-136 Heterodera glycines putative gland protein G33E05; Hg-G33E05 2.99 0.0032 1.523165321
R-8 DAY-SUPPRESSED         
Afx ID Array ID Best Hit ID E-value Best Hit Organism Best Hit Description FC P-value q-value(%)
HgAffx.17401.1.S1_at CB825108 NP_495430 2.00E-84 Caenorhabditis elegans steroid Alpha ReducTase family member (art-1) -17 0.0000588 0
HgAffx.7076.1.S1_at Y13906.1 CAA74204 2.00E-158 Heterodera glycines serine proteinase -16.4 0.000412 0
HgAffx.1292.1.S1_at CB378350 NP_783594 1.00E-21 Mus musculus histone cluster 1, H2ba -15.5 0.00451 0.280100042
HgAffx.14690.2.S1_at CB826267 XP_001668392 6.00E-34 Caenorhabditis briggsae AF16 Hypothetical protein CBG12388 -15.2 0.00248 0.177088891
HgAffx.19766.1.S1_at CB375606 AAG21338 4.00E-12 Heterodera glycines hypothetical esophageal gland cell secretory protein 9 -12.7 0.00155 0.177088891
HgAffx.22425.1.S1_at BI396655 NP_501123 1.00E-19 Caenorhabditis elegans COLlagen family member (col-113) -12.5 0.000818 0.177088891
HgAffx.2920.1.S1_at CK349770 AAL78218 5.00E-48 Heterodera glycines histone Hgg-28 -12.1 0.0124 0.60765796
HgAffx.17467.1.S1_at CB299232 NP_509186 4.00E-15 Caenorhabditis elegans Carbonic AnHydrase family member (cah-5) -11.9 0.000438 0
HgAffx.3069.1.S1_at CK350667 XP_001175793 2.00E-18 Strongylocentrotus purpuratus PREDICTED: similar to histone H2A -11.7 0.00802 0.48372909
HgAffx.18866.1.S1_at CA940314 CAB88204 5.00E-20 Globodera pallida putative cuticular collagen -11.7 0.00213 0.177088891
HgAffx.17449.1.S1_at CK348660 XP_001541426 5.00E-16 Ajellomyces capsulatus NAm1 histone H2A -11.1 0.0143 0.817748094
HgAffx.2088.1.S1_at CK351923 XP_001668016 2.00E-25 Caenorhabditis briggsae AF16 Hypothetical protein CBG03859 -11.1 0.00765 0.41363165
HgAffx.2863.1.S1_at CK349827 AAR85527 6.00E-46 Meloidogyne incognita 14-3-3b protein -10.3 0.0195 1.068579553
HgAffx.11150.1.S1_at CB378957 NP_508280 3.00E-96 Caenorhabditis elegans D1005.1 -10.3 0.00107 0.177088891
HgAffx.7347.1.S1_at CK394435 XP_001672273 4.00E-19 Caenorhabditis briggsae AF16 Hypothetical protein CBG11380 -10.2 0.0123 0.60765796
HgAffx.10212.1.S1_at CB378289 XP_001678368 1.00E-12 Caenorhabditis briggsae AF16 Hypothetical protein CBG21909 -9.72 0.0062 0.280100042
HgAffx.11037.1.S1_at CB935417 XP_001670890 0 Caenorhabditis briggsae AF16 Hypothetical protein CBG19828 -9.63 0.000703 0.177088891
HgAffx.19641.1.S1_at CD748996 XP_001895768 6.00E-22 Brugia malayi Probable 3-hydroxyacyl-CoA dehydrogenase B0272.3 -9.62 0.0112 0.60765796
HgAffx.1801.1.S1_at CK350930 XP_001429543 1.00E-36 Paramecium tetraurelia strain d4-2 hypothetical protein GSPATT00032377001 -9.21 0.0156 0.913385871
HgAffx.9435.1.S1_at CB379066 XP_001673815 3.00E-59 Caenorhabditis briggsae AF16 Hypothetical protein CBG23138 -9.16 0.0127 0.60765796
  1. Probe set lists that are induced in NL1-RHg at 8d that ultimately undergo a resistant reaction. FC-NL1-RHg, fold change-NL1-RHg; PV-NL1-RHg, p-value-NL1-RHg. A> |1.5| fold cutoff and P ≤ 0.05 was used. FDR (set at 10%) parameters are: Score (d), q-value (%).