From: Detection of genomic deletions in rice using oligonucleotide microarrays
Mutant line | Count of probe sets predicted to be deleted for different proportion (Prop) and log ratio (LR) combinations | Count of probe sets predicted to be deleted for different run length (RL)a and log ratio (LR) combinations | |||||
---|---|---|---|---|---|---|---|
 | LR = -0.6 Prop = 0.5 | LR = -0.8 Prop = 0.5 | LR = -1.0 Prop = 0.3 | LR = -1.0 Prop = 0.4 | LR = -0.8 RL = 3 | LR = -1 RL = 2 | LR = -1 RL = 3 |
d1 | 168 | 45 | 50 | 39 | 63 | 66 | 39 |
D256 | 2 | 0 | 0 | 0 | 1 | 11 | 0 |
D2943 | 2 | 0 | 0 | 0 | 2 | 2 | 1 |
G282 | 359 | 89 | 139 | 69 | 333 | 560 | 109 |
G650 | 123 | 46 | 29 | 19 | 55 | 45 | 23 |
G6485 | 24 | 0 | 0 | 0 | 0 | 2 | 0 |
G6489 | 35 | 5 | 5 | 1 | 7 | 7 | 2 |
G6603 | 163 | 0 | 0 | 0 | 54 | 30 | 3 |
G6686 | 15 | 5 | 9 | 8 | 10 | 14 | 5 |
G6728 | 24 | 0 | 0 | 0 | 4 | 15 | 1 |
G7534 | 41 | 2 | 2 | 2 | 46 | 35 | 5 |
G9799 | 29 | 25 | 28 | 24 | 34 | 55 | 24 |
N1856 | 40 | 36 | 40 | 33 | 36 | 41 | 30 |
N2045 | 50 | 17 | 22 | 19 | 26 | 37 | 21 |
WT check | 10 | 0 | 1 | 0 | 16 | 88 | 3 |
TPR | 0.800 | 0.767 | 0.833 | 0.800 | 0.800 | 0.833 | 0.800 |
FPR1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
FPR2 | 0.0002 | < 0.0001 | < 0.0001 | < 0.0001 | 0.0008 | 0.004 | 0.0002 |