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Table 4 Other selected genes differentially expressed during iron depletion and repletiona

From: Snapshot of iron response in Shewanella oneidensis by gene network reconstruction

Gene

Annotation

Change in expression at:

  

C1'

C5'

C10'

C20'

C40'

C60'

F1'

F5'

F10'

F20'

F40'

F60'

Protein synthesis

             

SO0227

ribosomal protein S7 (RpsG)

1.08

1.14

1.09

--

0.73

0.62

1.33

--

2.58

1.93

2.37

2.37

SO0233

ribosomal protein L23 (RplW)

--

--

--

--

0.61

0.55

1.84

--

3.42

3.64

3.78

--

SO0246

ribosomal protein L6 (RplF)

0.94

0.93

0.79

1.08

0.78

0.72

1.22

1.77

2.04

--

2.83

2.87

SO1205

ribosome-binding factor A (RbfA)

1.13

0.88

0.65

0.95

0.60

0.48

1.23

1.09

1.40

2.65

3.34

3.56

SO3927

ribosomal protein L9 (RplI)

--

--

--

1.33

0.50

0.69

1.29

--

--

3.58

3.56

3.83

SO4120

ribosomal protein L31(RpmE)

0.39

0.35

0.36

0.29

0.44

0.26

2.68

2.51

3.68

6.47

4.22

6.00

Aerobic energy metabolism

             

SO0343

2-methyl citrate dehydratase (AcnD)

1.19

0.99

0.86

2.23

3.53

8.22

1.14

0.86

0.47

0.21

0.25

0.34

SO0344

methylcitrate synthase (PrpC)

0.81

0.61

0.52

1.77

4.17

8.74

0.90

0.63

0.30

0.11

0.19

0.22

SO0345

2-methylisocitrate lyase (PrpB)

0.73

0.70

0.71

2.54

4.35

8.07

1.05

0.45

0.24

0.15

0.33

0.33

SO1538

isocitrate dehydrogenase

0.69

0.95

1.01

5.25

4.04

4.08

0.73

0.44

0.62

0.55

0.66

0.59

SO3855

malate dehydrogenase (SfcA)

0.88

0.92

1.14

3.16

2.73

2.48

1.03

0.97

1.11

1.30

1.17

1.37

  1. aExpression ratio values greater than 1 denote increases in gene expression and values between 0 and 1 indicate decreases in gene expression. --: not detected.