From: Snapshot of iron response in Shewanella oneidensis by gene network reconstruction
Gene | Annotation | Change in expression at: | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 |  | C1' | C5' | C10' | C20' | C40' | C60' | F1' | F5' | F10' | F20' | F40' | F60' |
Protein synthesis | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
SO0227 | ribosomal protein S7 (RpsG) | 1.08 | 1.14 | 1.09 | -- | 0.73 | 0.62 | 1.33 | -- | 2.58 | 1.93 | 2.37 | 2.37 |
SO0233 | ribosomal protein L23 (RplW) | -- | -- | -- | -- | 0.61 | 0.55 | 1.84 | -- | 3.42 | 3.64 | 3.78 | -- |
SO0246 | ribosomal protein L6 (RplF) | 0.94 | 0.93 | 0.79 | 1.08 | 0.78 | 0.72 | 1.22 | 1.77 | 2.04 | -- | 2.83 | 2.87 |
SO1205 | ribosome-binding factor A (RbfA) | 1.13 | 0.88 | 0.65 | 0.95 | 0.60 | 0.48 | 1.23 | 1.09 | 1.40 | 2.65 | 3.34 | 3.56 |
SO3927 | ribosomal protein L9 (RplI) | -- | -- | -- | 1.33 | 0.50 | 0.69 | 1.29 | -- | -- | 3.58 | 3.56 | 3.83 |
SO4120 | ribosomal protein L31(RpmE) | 0.39 | 0.35 | 0.36 | 0.29 | 0.44 | 0.26 | 2.68 | 2.51 | 3.68 | 6.47 | 4.22 | 6.00 |
Aerobic energy metabolism | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
SO0343 | 2-methyl citrate dehydratase (AcnD) | 1.19 | 0.99 | 0.86 | 2.23 | 3.53 | 8.22 | 1.14 | 0.86 | 0.47 | 0.21 | 0.25 | 0.34 |
SO0344 | methylcitrate synthase (PrpC) | 0.81 | 0.61 | 0.52 | 1.77 | 4.17 | 8.74 | 0.90 | 0.63 | 0.30 | 0.11 | 0.19 | 0.22 |
SO0345 | 2-methylisocitrate lyase (PrpB) | 0.73 | 0.70 | 0.71 | 2.54 | 4.35 | 8.07 | 1.05 | 0.45 | 0.24 | 0.15 | 0.33 | 0.33 |
SO1538 | isocitrate dehydrogenase | 0.69 | 0.95 | 1.01 | 5.25 | 4.04 | 4.08 | 0.73 | 0.44 | 0.62 | 0.55 | 0.66 | 0.59 |
SO3855 | malate dehydrogenase (SfcA) | 0.88 | 0.92 | 1.14 | 3.16 | 2.73 | 2.48 | 1.03 | 0.97 | 1.11 | 1.30 | 1.17 | 1.37 |