Table 3 Percentage of repeated base pairs within IHRs.
From: Genomic regions with distinct genomic distance conservation in vertebrate genomes
IHR1 | IHR2 | ||||
|---|---|---|---|---|---|
Observed | Expected | Observed | Expected | ||
Percentage of IHRs containing repeat (%) | 43 (0.001) | 74 | 97 (0.948) | 94 | |
Average percentage of repeated base pairs (%) | SINE | 4.26 (0.001) | 16.76 | 11.00 (0.001) | 13.51 |
LINE | 2.37 (0.001) | 26.63 | 13.42 (0.001) | 20.96 | |
LTR | 0.60 (0.001) | 10.81 | 4.67 (0.001) | 8.53 | |
Low_complexity | 4.86 (1) | 0.73 | 0.72 (0.984) | 0.58 | |
scRNA | 0 (0.001) | 0.005 | 0.006 (0.783) | 0.004 | |
DNA | 0.75 (0.001) | 3.88 | 2.78 (0.146) | 3.06 | |
RNA | 0.03 (0.967) | 0.005 | 0.001 (0.404) | 0.005 | |
srpRNA | 0 (0.001) | 0.008 | 0.0008 (0.110) | 0.008 | |
snRNA | 0 (0.001) | 0.02 | 0.01 (0.716) | 0.01 | |
tRNA | 0 (0.001) | 0.003 | 0.0009(0.219) | 0.003 | |
rRNA | 0 (0.001) | 0.007 | 0.005(0.635) | 0.006 | |
Simple_repeat | 1.04 (0.476) | 1.17 | 1.02 (0.828) | 0.92 | |
Satellite | 0 (0.001) | 0.49 | 0 (0.001) | 0.36 | |