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Table 2 Comparative evaluation of polymorphic potential of the microsatellite markers designed from the non-coding and coding sequence components of rice genes

From: Genic non-coding microsatellites in the rice genome: characterization, marker design and use in assessing genetic and evolutionary relationships among domesticated groups

    

Number of alleles

 

Sequence components of genes

GNMS markers

Number of GNMS markers amplified

Number (%) polymorphic GNMS markers

Minimum

Maximum

Average

Mean PIC

Promoters

15

15

8 (53.3)

2

6

4

0.64

5'UTRs

15

15

6 (40)

2

5

3.5

0.62

Introns

15

11

11 (73.3)

2

8

5

0.72

3'UTRs

15

15

5 (33.3)

2

4

3

0.58

Total GNMS

60

56

30 (53.5)

-

-

-

0.64

CDS

15

15

4 (26.6)

1

2

1.5

0.10