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Table 2 Disproportionately distributed domains

From: Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome

Species

Pfam Id

Domain name

CS genes w. domain

AS genes w. domain

p-value

Bias

Arabidopsis

      
 

PF00560

LRR_1

153

14

3.55E-08

CS

 

PF08263

LRRNT_2

123

9

5.65E-08

CS

 

PF02519

Auxin_inducible

55

0

1.44E-07

CS

 

PF01535

PPR

146

15

4.03E-07

CS*

 

PF00076

RRM_1

114

77

1.61E-06

AS*

 

PF00201

UDPGT

69

3

2.73E-06

CS*

 

PF00067

p450

143

18

1.03E-05

CS*

 

PF00847

AP2

115

15

0.0001159

CS

rice

      
 

PF01535

PPR

179

17

1.53E-11

CS*

 

PF00076

RRM_1

99

89

1.04E-08

AS*

 

PF00646

F-box

202

34

4.69E-07

CS

 

PF00067

p450

137

19

1.52E-06

CS*

 

PF00201

UDPGT

70

5

3.59E-06

CS*

 

PF07859

Abhydrolase_3

28

0

0.000101

CS

maize

      
 

PF01609

Transposase_11

52

0

9.62E-13

CS

 

PF01535

PPR

64

3

5.70E-12

CS*

 

PF00201

UDPGT

46

7

9.53E-06

CS*

 

PF00067

p450

46

10

0.0001739

CS*

 

PF00076

RRM_1

47

65

0.0002

AS*

  1. * Domains that have the same distribution bias in all three species. The distribution values and bias are shown for all domains that were significantly overrepresented in either constitutively (CS) or alternatively (AS) spliced genes.