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Table 5 Number of splicing patterns of domain types spliced-out from a tandem repeat in all three species

From: Comparative analysis indicates that alternative splicing in plants has a limited role in functional expansion of the proteome

Pfam Id

Domain name

A. thaliana

rice

maize

PF00076

RRM_1

4

5

4

PF00400

WD40

9

6

4

PF00153

Mito_carr

2

3

2

PF00035

dsrm

2

1

1

PF00036

efhand

5

5

1

PF00096

zf-C2H2

1

1

1

PF00249

Myb_DNA-binding

2

1

2

PF00412

LIM

1

1

2

PF00614

PLDc

1

1

1

PF00641

zf-RanBP

1

1

2

PF00642

zf-CCCH

1

2

2

PF00643

zf-B_box

1

1

1

PF00892

DUF6

2

1

1

PF01535

PPR

5

1

1

PF06943

zf-LSD1

1

1

1

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BMC Genomics

ISSN: 1471-2164

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