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Table 2 Modified nucleotides found in tRNA

From: Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana

Region name Genomic nucleotide (a) (b) TPQ for non-modified bases # of tRNA Uniq # of sRNA Total TPQ of sRNA Edited nucleotides TPQ of edited nucleotides Type(s) of tRNA
T_loop A (5) m1A 4454.04 383 4198 12127.1 U,G,C 9005.67,2958.02,163.49 Ala,Arg,Asp,Cys,Gln,Glu,Gly,His,Ile,Leu,Lys,Phe,Pro,Ser,Thr,Trp,Val
D->AntiC G (3) m22G 372.31 34 257 894.15 U,A,C 660.14,155.40,78.64 Asn,Met,Tyr
Acc->D G (1) m2G 23314.9 138 682 767.54 C,U,A 378.05,212.08,176.87 Arg,Lys,Met,Ser,Trp,Tyr,Val
D_stem_5' C (2) ac4C 17339.82 17 51 212.86 A,U,G 197.48,8.42,6.96 Arg,Gly
AntiC_loop A (4) I 0 6 86 98.95 G 98.95 Thr
D_stem_5' T N/A N/A 11624.69 60 180 43.2 C,A 23.40,19.80 Tyr
Acc_stem_5' G N/A N/A 16999.53 17 45 38.64 A,U 32.15,6.38 Arg,Gly
D_loop G N/A N/A 2420.16 6 12 24.9 A 24.9 Ser
D_loop A N/A N/A 1348 1 2 22 U,C 13.90,8.10 Gln
Acc_stem_5' T N/A N/A 2406.42 6 12 11.4 C,G 9.42,1.98 Ser
AntiC_loop G N/A m1G 47.12 26 52 9.1 U,C 8.32,0.78 Pro
T_stem_5' G N/A N/A 313.29 3 6 8.61 A,C 7.89,0.69 Asp
  1. (a) Corresponding position in Figure 2.
  2. (b) Corresponding modified base.