Table 2 Modified nucleotides found in tRNA
From: Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana
Region name | Genomic nucleotide | (a) | (b) | TPQ for non-modified bases | # of tRNA | Uniq # of sRNA | Total TPQ of sRNA | Edited nucleotides | TPQ of edited nucleotides | Type(s) of tRNA |
|---|---|---|---|---|---|---|---|---|---|---|
T_loop | A | (5) | m1A | 4454.04 | 383 | 4198 | 12127.1 | U,G,C | 9005.67,2958.02,163.49 | Ala,Arg,Asp,Cys,Gln,Glu,Gly,His,Ile,Leu,Lys,Phe,Pro,Ser,Thr,Trp,Val |
D->AntiC | G | (3) | m22G | 372.31 | 34 | 257 | 894.15 | U,A,C | 660.14,155.40,78.64 | Asn,Met,Tyr |
Acc->D | G | (1) | m2G | 23314.9 | 138 | 682 | 767.54 | C,U,A | 378.05,212.08,176.87 | Arg,Lys,Met,Ser,Trp,Tyr,Val |
D_stem_5' | C | (2) | ac4C | 17339.82 | 17 | 51 | 212.86 | A,U,G | 197.48,8.42,6.96 | Arg,Gly |
AntiC_loop | A | (4) | I | 0 | 6 | 86 | 98.95 | G | 98.95 | Thr |
D_stem_5' | T | N/A | N/A | 11624.69 | 60 | 180 | 43.2 | C,A | 23.40,19.80 | Tyr |
Acc_stem_5' | G | N/A | N/A | 16999.53 | 17 | 45 | 38.64 | A,U | 32.15,6.38 | Arg,Gly |
D_loop | G | N/A | N/A | 2420.16 | 6 | 12 | 24.9 | A | 24.9 | Ser |
D_loop | A | N/A | N/A | 1348 | 1 | 2 | 22 | U,C | 13.90,8.10 | Gln |
Acc_stem_5' | T | N/A | N/A | 2406.42 | 6 | 12 | 11.4 | C,G | 9.42,1.98 | Ser |
AntiC_loop | G | N/A | m1G | 47.12 | 26 | 52 | 9.1 | U,C | 8.32,0.78 | Pro |
T_stem_5' | G | N/A | N/A | 313.29 | 3 | 6 | 8.61 | A,C | 7.89,0.69 | Asp |