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Table 3 Substitutions found in miRNAs

From: Bioinformatics analysis suggests base modifications of tRNAs and miRNAs in Arabidopsis thaliana

Name of microRNA Summary of substitutionsa
MIR159a, MIR159b 5:G(27900.95)>CA(21), 12:G(28142.15)>CA(45.4), 13:G(35092.7)>UA(144.86)
MIR161 6:G(20643.65)>CA(50.2), 9:A(20057.15)>GCU(109.2), 13:C(18208.1)>GA(8.3)
MIR162a, MIR162b 14:G(3040.5)>UA(58.8)
MIR165a, MIR166a, MIR166b, MIR166c, MIR166d, MIR166e, MIR166f, MIR166g 4:G(54554.7)>CUA(134.7), 6:C(54554.7)>UA(209.21), 7:C(44547.6)>U(149.93), 8:A(35038.15)>GU(83.7), 9:G(47675.1)>CUA(328.62), 10:G(54539.9)>A(106.29), 11:C(54539.9)>GUA(278.15), 12:U(54539.9)>GCA(379.38), 13:U(54539.9)>CA(256.11)
MIR167a, MIR167b, MIR167d 4:A(219813.04)>GCU(76.99), 5:G(219813.04)>CUA(325.81), 7:U(158835.06)>GCA(466.4), 8:G(158835.06)>CUA(326.2), 9:C(158835.06)>GUA(602.6), 10:C(158835.06)>GU(431.4), 11:A(219826.94)>GCU(3686.02), 12:G(219826.94)>CU(1018.4), 13:C(158835.06)>GU(336.74)
MIR168a, MIR168b 9:U(15948.36)>CA(36.6), 10:G(15933.26)>A(24.3), 12:A(15933.26)>GC(22.2), 13:G(15933.26)>UA(43.1), 14:G(15933.26)>UA(41.3)
MIR169a, MIR169b, MIR169c, MIR169d, MIR169e, MIR169h, MIR169i, MIR169j, MIR169k, MIR169l, MIR169m, MIR169n 6:C(24472.01)>GU(40.32), 8:A(87930.11)>GCU(77.31), 9:G(58812.37)>CUA(501.61), 10:G(37156.57)>CUA(161.5), 11:A(10397.81)>GC(26.88), 13:G(87930.11)>CUA(1043.6), 14:A(34341.26)>G(44.23), 15:C(38019.92)>GUA(109.1)
MIR170 5:U(50752.3)>GC(244.7), 8:G(50752.3)>CA(23.8)
MIR171a 7:A(2397.55)>GU(54.5)
MIR172a, MIR172b, MIR172c 8:U(211955.28)>GC(157.21), 11:U(83771.26)>C(90.98)
MIR319a, MIR319b 9:A(1866.44)>CU(37)
MIR390a, MIR390b PRE74:A(6807.15)>G(21.5), PRE76:C(6807.15)>U(78.6), 6:C(41119.9)>UA(27.6), 7:A(20563.45)>G(48.5)
MIR858 5:G(12416.25)>CU(13.15), 12:G(12416.25)>CA(8.55)
  1. (a) Format here is: position in mature miRNA:un-substituted nucleotide at this position (TQP of miRNAs without substitution) > substituted nucleotide(s) (TQP of miRNAs with substitution). In MIR390, two substitutions were found in pre-miRNA regions; the positions and frequncies of these subsitutions are indicated following "PRE": position from 5' end of pre-miRNA:unsubstituted nucleotide at this position (TPQ of sRNAs without substitution)>substituted nucleotide (TPQ of the sRNAs with substitution).