Phylogenetic reconstruction and the identification of ancient polymorphism in the Bovini tribe (Bovidae, Bovinae)

MacEachern, Sean; McEwan, John; Goddard, Mike

doi:10.1186/1471-2164-10-177

BMC Genomics

Table 2 Pairwise comparisons between members of the Bovini tribe for the number of silent substitutions per site summarised for all genes, with intronic substitutions (dI) below the diagonal and synonymous substitutions (dS) above the diagonal.

From: Phylogenetic reconstruction and the identification of ancient polymorphism in the Bovini tribe (Bovidae, Bovinae)

	Anc	Ban	Bis	BubB	BubC	Ela	Gau	Her	Ind	Mit	Mur	Hol	Syn	Tul	Yak
Anc	-	0.023	0.025	0.033	0.032	0.032	0.026	0.021	0.032	0.024	0.034	0.02	0.028	0.023	0.024
Ban	0.016	-	0.01	0.033	0.033	0.054	0.012	0.011	0.032	0.011	0.033	0.009	0.029	0.011	0.009
Bis	0.015	0.008	-	0.034	0.035	0.06	0.012	0.011	0.034	0.013	0.033	0.01	0.031	0.01	0.009
BubB	0.018	0.023	0.022	-	0.005	0.057	0.034	0.034	0.006	0.033	0.004	0.032	0.02	0.034	0.033
BubC	0.018	0.022	0.022	0.004	-	0.053	0.035	0.034	0.003	0.034	0.003	0.033	0.02	0.035	0.035
Ela	0.024	0.038	0.038	0.037	0.037	-	0.059	0.058	0.058	0.059	0.055	0.053	0.057	0.059	0.059
Gau	0.016	0.008	0.008	0.022	0.022	0.038	-	0.012	0.035	0.006	0.034	0.011	0.031	0.013	0.009
Her	0.016	0.011	0.01	0.024	0.023	0.04	0.012	-	0.034	0.01	0.035	0.002	0.029	0.003	0.01
Ind	0.019	0.023	0.024	0.005	0.003	0.038	0.025	0.028	-	0.034	0.002	0.032	0.02	0.034	0.034
Mit	0.016	0.008	0.008	0.022	0.022	0.04	0.006	0.009	0.023	-	0.034	0.008	0.03	0.01	0.009
Mur	0.019	0.024	0.024	0.004	0.004	0.038	0.025	0.025	0.003	0.024	-	0.032	0.019	0.035	0.034
Hol	0.015	0.009	0.008	0.023	0.022	0.039	0.011	0.003	0.025	0.009	0.024	-	0.026	0.003	0.008
Syn	0.016	0.023	0.022	0.017	0.016	0.037	0.023	0.024	0.018	0.023	0.018	0.024	-	0.029	0.028
Tul	0.016	0.01	0.009	0.023	0.023	0.039	0.011	0.004	0.025	0.009	0.025	0.003	0.024	-	0.009
Yak	0.016	0.008	0.006	0.022	0.022	0.038	0.008	0.008	0.024	0.008	0.023	0.007	0.022	0.007	-

Species: (Anc: Ancient, Ban: Banteng, Bis: Bison, BubB & BubC: Asian water buffalo, Ela: Eland, Gau: Gaur, Her: Hereford, Ind & Mur: Indian water buffalo, Mit: Mithan, Hol: Holstein, Syn: African buffalo, Tul: Tuli, and Yak)

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ISSN: 1471-2164

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