Genome wide signatures of positive selection: The comparison of independent samples and the identification of regions associated to traits

Table 3 Trait associations and high F_ST values

Locus	Chr	Position	Group	N	p₀	V_r	a	SE_a	α	SE_α
Multiple traits
RFI
rs29019351	2	64740286	TEM	104	0.91	0.0370	0.654	0.214	-0.169	0.219
rs29019352	2	64740428	TEM	104	0.09	0.0370	-0.654	0.209	0.169	0.223
rs29021800	2	64792978	TEM	102	0.08	0.0412	-0.653	0.209	0.259	0.223
rs29025811	5	51065596	TRO	65	0.76	0.0405	-0.401	0.191	-0.374	0.206
rs29010304	28	24504312	TRO	65	0.28	0.0659	0.332	0.218	0.487	0.239
Yield
rs29015041	6	88160023	TEM	58	0.16	0.0517	-0.900	0.320	-0.555	0.333
IMF
rs29019351	2	64740286	TEM	99	0.91	0.0212	0.554	0.223	0.354	0.243
rs29019352	2	64740428	TEM	99	0.09	0.0212	-0.554	0.222	-0.354	0.250
rs29021800	2	64792978	TEM	97	0.09	0.0190	-0.550	0.229	-0.282	0.245
rs29025811	5	51065596	TRO	62	0.75	0.0808	-0.512	0.159	-0.344	0.162
rs29015041	6	88160023	TEM	99	0.22	0.0380	-0.354	0.182	-0.439	0.193
rs29010304	28	24504312	TRO	62	0.29	0.0972	0.228	0.162	0.440	0.188
Single traits
RFI
rs29021601	11	39253966	TEM	104	0.84	0.0403	-0.363	0.201	-0.483	0.209
rs29019566	15	18646517	TEM	102	0.93	0.0253	0.505	0.210	-0.115	0.214
rs29026034	16	23320981	TEM	103	0.83	0.0399	-0.680	0.188	-0.286	0.179
Yield
rs29011076	4	11913823	TEM	58	0.69	0.1102	0.527	0.374	0.873	0.341
rs29013771	4	54568493	TEM	53	0.13	0.0454	0.650	0.331	-0.317	0.378
rs29026560	9	47205531	TEM	58	0.28	0.0505	1.038	0.327	0.733	0.324
IMF
rs29012117	13	28925713	TRO	62	0.57	0.0814	-0.435	0.177	-0.410	0.177
rs29021963	16	31068223	TRO	57	0.62	0.1100	-0.469	0.177	-0.392	0.242

Locus dbSNP identifier, Chr chromosome Position in bp, Group breed type, temperate or tropical, N sample size, p₀ is the allele higher up the alphabet, V_r is the residual variance explained by the genotypes, a is the additive effect, SE_a is the standard error of a, α is the allele substitution effect, SE_αis the standard error of α.
RFI residual food intake in kg per day, Yield is the meat yield of the animal as a percentage, and IMF is the intramuscular fat percentage

ISSN: 1471-2164