Table 6 Assembly contig and scaffold statistics
Btau 1.0 | Btau 2.0 | Btau 3.1 | Btau 4.0 | |
|---|---|---|---|---|
Contigs | ||||
Number | 795,212 | 321,107 | 131,620 | 131,620 |
N50(kb) | 4.20 | 18.90 | 48.70 | 48.70 |
Bases+Gaps(Gb) | 2.26 | 2.62 | 2.73 | 2.73 |
Bases(Gb) | 2.26 | 2.62 | 2.73 | 2.73 |
Percentage | 85 | 95.1 | 95 | |
Anchored and Oriented Scaffolds | ||||
Number | 0 | 2215 | 2,055 | 2,194 |
N50(kb) | 712 | 1,393 | 2,187 | |
Bases+Gaps(Gb) | 1.07 | 2.08 | 2.54 | |
Bases(Gb) | 0.89 | 1.99 | 2.43 | |
Percentage | 0 | 34.5 | 72.7 | 89 |
Anchored and Unoriented Scaffolds | ||||
Number | 0 | 2194 | 998 | 137 |
N50(kb) | 535 | 547 | 500 | |
Bases+Gaps(Gb) | 0.63 | 0.32 | 0.04 | |
Bases(Gb) | 0.51 | 0.3 | 0.04 | |
Percentage | 0 | 20.3 | 11 | 1 |
Unanchored Scaffolds | ||||
Number | 449,727 | 98,058 | 13,045 | 11,830 |
N50(kb) | 13.5 | 189 | 166 | 94 |
Bases+Gaps(Gb) | 2.34 | 1.4 | 0.47 | 0.28 |
Bases(Gb) | 2.26 | 1.2 | 0.44 | 0.26 |
Percentage | 100 | 45.2 | 16.3 | 10 |
Total Scaffolds | ||||
Number | 449,727 | 102,467 | 16,098 | 14,161 |
N50(kb) | 13.5 | 434 | 997 | 1,922 |
Bases+Gaps(Gb) | 2.34 | 3.1 | 2.87 | 2.87 |
Bases(Gb) | 2.26 | 2.62 | 2.73 | 2.73 |
Percentage | 100 | 100 | 100 | 100 |